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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8601 and 8602 are separated by 79 nucleotides
8602 and 8603 are separated by 544 nucleotides
8603 and 8604 are separated by 255 nucleotides
8604 and 8605 are separated by 53 nucleotides
mRNA_233: 8601 - K06287 maf septum formation protein, at 575,956 to 577,138
8601
mRNA_234: 8602 - K00452 HAAO 3-hydroxyanthranilate 3,4-dioxygenase, at 577,218 to 578,179
8602
mRNA_235: 8603 - KOG2614 Kynurenine 3-monooxygenase and related flavoprotein monooxygenases, at 578,724 to 580,674
8603
mRNA_236: 8604 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047, at 580,930 to 582,126
8604
mRNA_237: 8605 - K08098 PIGZ, SMP3 phosphatidylinositol glycan, class Z, at 582,180 to 584,217
8605
Group
Condition
mRNA
_233
mRNA
_234
mRNA
_235
mRNA
_236
mRNA
_237
8601
8602
8603
8604
8605
ypd buoyancy
40 hrs No Buoyancy Separation
-2.8
-1.3
+1.2
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-2.3
+0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-1.3
-0.0
-0.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
-1.1
+0.1
-0.6
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-1.6
-0.1
-0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.5
-1.1
+0.2
-0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.3
-0.5
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
-0.9
-0.1
+0.1
-0.1
N.D.
auxotrophy
YNB Glucose
-0.3
-0.5
-0.2
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-1.0
+0.6
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.7
-0.5
-0.0
+0.3
N.D.
auxotrophy
Dropout Complete
+0.3
-1.2
+0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
-0.5
+0.2
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.8
-0.1
+0.5
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.3
+0.5
-0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.4
+0.7
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.2
-0.6
+0.3
+0.1
N.D.
growth on oleic acid
YNB Glucose
+0.1
+0.0
+0.1
+0.0
N.D.
growth on ypd
YPD
+0.2
+0.2
-0.7
+0.9
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.2
+0.9
+0.3
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.8
-0.3
+0.3
+0.2
N.D.
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