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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8616 and 8617 are separated by 175 nucleotides
8617 and 8618 are separated by 832 nucleotides
8618 and 8619 are separated by 136 nucleotides
8619 and 8620 are separated by 168 nucleotides
mRNA_248: 8616 - K01796 E5.1.99.4, AMACR, mcr alpha-methylacyl-CoA racemase, at 603,396 to 605,038
8616
mRNA_249: 8617 - K03538 POP4, RPP29 ribonuclease P protein subunit POP4, at 605,214 to 606,480
8617
mRNA_250: 8618 - K19245 JLP1 sulfonate dioxygenase, at 607,313 to 608,781
8618
mRNA_251: 8619 - HMMPfam-ACT domain-PF13840,PIRSF--PIRSF008459,SUPERFAMILY--SSF55021, at 608,918 to 609,439
8619
mRNA_252: 8620 - Hypothetical Protein, at 609,608 to 610,870
8620
Group
Condition
mRNA
_248
mRNA
_249
mRNA
_250
mRNA
_251
mRNA
_252
8616
8617
8618
8619
8620
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
-0.7
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.2
N.D.
-0.0
-0.4
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.7
+0.1
-0.1
ypd buoyancy
40 hrs High Buoyancy
-0.3
N.D.
-0.0
-0.4
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.4
N.D.
+0.1
-0.2
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
+0.5
N.D.
-0.8
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.1
N.D.
-0.1
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
N.D.
+0.2
-0.6
+0.0
growth on oleic acid
YNB Glucose
+0.0
N.D.
-0.3
+0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
N.D.
-0.1
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
-0.0
-0.1
-0.0
auxotrophy
YNB Glucose
-0.0
N.D.
+0.1
-0.1
-0.1
auxotrophy
Dropout Complete
-0.1
N.D.
+0.2
-0.3
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
N.D.
-0.1
+0.2
+0.2
growth on ypd
YPD
-0.0
N.D.
-0.1
+0.6
-0.2
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.4
+0.5
+0.1
growth on ricinoleic acid
YNB Glucose
+0.0
N.D.
+0.2
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
+0.2
-0.1
+0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.1
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
+0.2
+0.4
+0.4
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.2
N.D.
+0.2
+0.7
+0.4
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