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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8617 and 8618 are separated by 832 nucleotides
8618 and 8619 are separated by 136 nucleotides
8619 and 8620 are separated by 168 nucleotides
8620 and 8621 are separated by 159 nucleotides
mRNA_249: 8617 - K03538 POP4, RPP29 ribonuclease P protein subunit POP4, at 605,214 to 606,480
8617
mRNA_250: 8618 - K19245 JLP1 sulfonate dioxygenase, at 607,313 to 608,781
8618
mRNA_251: 8619 - HMMPfam-ACT domain-PF13840,PIRSF--PIRSF008459,SUPERFAMILY--SSF55021, at 608,918 to 609,439
8619
mRNA_252: 8620 - Hypothetical Protein, at 609,608 to 610,870
8620
mRNA_253: 8621 - KOG2273 Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins, at 611,030 to 612,229
8621
Group
Condition
mRNA
_249
mRNA
_250
mRNA
_251
mRNA
_252
mRNA
_253
8617
8618
8619
8620
8621
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.3
-0.1
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.8
-0.3
+0.1
+0.3
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.0
-0.1
-0.0
-0.6
auxotrophy
YNB Glucose
N.D.
+0.1
-0.1
-0.1
-0.6
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.0
-0.4
-0.2
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.2
-0.6
+0.0
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.7
+0.0
-0.2
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.7
+0.1
-0.1
+0.3
auxotrophy
Dropout Complete
N.D.
+0.2
-0.3
+0.2
-0.6
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
-0.4
-0.0
+0.0
growth on oleic acid
YNB Glucose
N.D.
-0.3
+0.3
-0.3
+0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
+0.2
-0.1
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
-0.1
+0.3
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
-0.4
+0.5
+0.1
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
-0.2
-0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.1
+0.2
+0.2
+0.0
growth on ypd
YPD
N.D.
-0.1
+0.6
-0.2
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.2
+0.2
+0.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
+0.4
+0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.2
+0.7
+0.4
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.2
+0.4
+0.4
+0.1
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