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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8622 and 8623 are separated by 297 nucleotides
8623 and 8624 are separated by 273 nucleotides
8624 and 8625 are separated by 698 nucleotides
8625 and 8626 are separated by 720 nucleotides
mRNA_254: 8622 - KOG0970 DNA polymerase alpha, catalytic subunit, at 612,522 to 613,328
8622
mRNA_255: 8623 - K02320 POLA1 DNA polymerase alpha subunit A, at 613,626 to 618,274
8623
mRNA_256: 8624 - K11254 H4 histone H4, at 618,548 to 619,064
8624
mRNA_257: 8625 - KOG1745 Histones H3 and H4, at 619,763 to 620,480
8625
mRNA_258: 8626 - HMMPfam-Eukaryotic protein of unknown function (DUF1764)-PF08576, at 621,201 to 621,954
8626
Group
Condition
mRNA
_254
mRNA
_255
mRNA
_256
mRNA
_257
mRNA
_258
8622
8623
8624
8625
8626
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-1.7
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-1.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.7
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
N.D.
N.D.
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.0
N.D.
N.D.
auxotrophy
Dropout Complete
N.D.
N.D.
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.1
N.D.
N.D.
growth on ypd
YPD
N.D.
N.D.
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.6
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.7
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.7
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.9
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.9
N.D.
N.D.
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