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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8624 and 8625 are separated by 698 nucleotides
8625 and 8626 are separated by 720 nucleotides
8626 and 8627 are separated by 535 nucleotides
8627 and 8628 are separated by 251 nucleotides
mRNA_256: 8624 - K11254 H4 histone H4, at 618,548 to 619,064
8624
mRNA_257: 8625 - KOG1745 Histones H3 and H4, at 619,763 to 620,480
8625
mRNA_258: 8626 - HMMPfam-Eukaryotic protein of unknown function (DUF1764)-PF08576, at 621,201 to 621,954
8626
mRNA_259: 8627 - HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356, at 622,490 to 625,658
8627
mRNA_260: 8628 - KOG2534 DNA polymerase IV (family X), at 625,910 to 627,593
8628
Group
Condition
mRNA
_256
mRNA
_257
mRNA
_258
mRNA
_259
mRNA
_260
8624
8625
8626
8627
8628
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.7
N.D.
N.D.
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
N.D.
N.D.
+0.0
-0.9
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
N.D.
N.D.
-0.6
+0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.9
N.D.
N.D.
-0.5
-1.1
facs on lipid accumulation
Sorted No BODIPY Gate
-1.1
N.D.
N.D.
+0.3
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.6
N.D.
N.D.
-0.2
-0.6
growth on ypd
YPD
+0.2
N.D.
N.D.
-0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.4
N.D.
N.D.
-0.3
-0.1
auxotrophy
Dropout Complete
+0.1
N.D.
N.D.
-0.1
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
N.D.
+0.2
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.0
N.D.
N.D.
+0.1
-0.1
growth on oleic acid
YNB Oleic Acid
-0.4
N.D.
N.D.
+0.2
+0.3
auxotrophy
YNB Glucose
-0.0
N.D.
N.D.
+0.2
+0.1
growth on oleic acid
YNB Glucose
+0.1
N.D.
N.D.
-0.1
+0.4
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
N.D.
+0.4
-0.2
ypd buoyancy
40 hrs High Buoyancy
+0.7
N.D.
N.D.
+0.3
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.7
N.D.
N.D.
+0.2
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
N.D.
+1.0
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.9
N.D.
N.D.
+0.2
-0.0
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
N.D.
+0.8
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
N.D.
N.D.
+1.2
-0.1
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