Fitness for 5 genes in Rhodosporidium toruloides IFO0880

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500 nt 8625 and 8626 are separated by 720 nucleotides8626 and 8627 are separated by 535 nucleotides8627 and 8628 are separated by 251 nucleotides8628 and 8629 are separated by 19 nucleotides mRNA_257: 8625 - KOG1745 Histones H3 and H4, at 619,763 to 620,480 8625 mRNA_258: 8626 - HMMPfam-Eukaryotic protein of unknown function (DUF1764)-PF08576, at 621,201 to 621,954 8626 mRNA_259: 8627 - HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356, at 622,490 to 625,658 8627 mRNA_260: 8628 - KOG2534 DNA polymerase IV (family X), at 625,910 to 627,593 8628 mRNA_261: 8629 - KOG1745 Histones H3 and H4, at 627,613 to 628,433 8629
Group Condition mRNA_257 mRNA_258 mRNA_259 mRNA_260 mRNA_261
8625 8626 8627 8628 8629
buoyancy on lipid accumulation 40 hrs No Buoyancy Separation N.D. N.D. -0.5 -1.1 -0.4
buoyancy on lipid accumulation 40 hrs High Buoyancy N.D. N.D. +0.0 -0.9 -0.5
buoyancy on lipid accumulation 40 hrs Median Buoyancy N.D. N.D. -0.2 -0.6 +0.1
auxotrophy Dropout Complete N.D. N.D. -0.1 -0.0 -0.6
ypd buoyancy 40 hrs Median Buoyancy N.D. N.D. -0.3 -0.1 -0.2
facs on lipid accumulation Sorted Low BODIPY Gate N.D. N.D. +0.4 -0.3 -0.4
growth on ypd YPD N.D. N.D. -0.2 -0.2 +0.1
auxotrophy YNB Glucose 75mM Arginine N.D. N.D. +0.1 -0.1 -0.3
facs on lipid accumulation Sorted High BODIPY Gate N.D. N.D. -0.6 +0.5 -0.1
auxotrophy YNB Glucose 75mM Methionine N.D. N.D. +0.4 -0.2 -0.3
ypd buoyancy 40 hrs No Buoyancy Separation N.D. N.D. +0.2 -0.1 +0.0
ypd buoyancy 40 hrs High Buoyancy N.D. N.D. +0.3 -0.1 +0.1
growth on oleic acid YNB Glucose N.D. N.D. -0.1 +0.4 -0.0
buoyancy on lipid accumulation 40 hrs Low Buoyancy N.D. N.D. +0.2 -0.0 +0.2
ypd buoyancy 40 hrs Low Buoyancy N.D. N.D. +0.2 -0.0 +0.2
facs on lipid accumulation Sorted No BODIPY Gate N.D. N.D. +0.3 +0.2 +0.1
auxotrophy YNB Glucose N.D. N.D. +0.2 +0.1 +0.3
growth on ricinoleic acid YNB Methylricinoleic Acid N.D. N.D. +1.0 +0.1 -0.4
growth on oleic acid YNB Oleic Acid N.D. N.D. +0.2 +0.3 +0.2
growth on ricinoleic acid YNB Glucose N.D. N.D. +0.8 +0.1 +0.3
growth on ricinoleic acid YNB Ricinoleic Acid N.D. N.D. +1.2 -0.1 +0.1
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