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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8625 and 8626 are separated by 720 nucleotides
8626 and 8627 are separated by 535 nucleotides
8627 and 8628 are separated by 251 nucleotides
8628 and 8629 are separated by 19 nucleotides
mRNA_257: 8625 - KOG1745 Histones H3 and H4, at 619,763 to 620,480
8625
mRNA_258: 8626 - HMMPfam-Eukaryotic protein of unknown function (DUF1764)-PF08576, at 621,201 to 621,954
8626
mRNA_259: 8627 - HMMPfam-Domain of unknown function (DUF1771)-PF08590,ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103,ProSiteProfiles-Smr domain profile.-PS50828,SMART-zinc finger-SM00356, at 622,490 to 625,658
8627
mRNA_260: 8628 - KOG2534 DNA polymerase IV (family X), at 625,910 to 627,593
8628
mRNA_261: 8629 - KOG1745 Histones H3 and H4, at 627,613 to 628,433
8629
Group
Condition
mRNA
_257
mRNA
_258
mRNA
_259
mRNA
_260
mRNA
_261
8625
8626
8627
8628
8629
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.5
-1.1
-0.4
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.0
-0.9
-0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.2
-0.6
+0.1
auxotrophy
Dropout Complete
N.D.
N.D.
-0.1
-0.0
-0.6
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.3
-0.1
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.4
-0.3
-0.4
growth on ypd
YPD
N.D.
N.D.
-0.2
-0.2
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.6
+0.5
-0.1
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.4
-0.2
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
-0.1
+0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
+0.3
-0.1
+0.1
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.1
+0.4
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.0
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
+0.2
-0.0
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.3
+0.2
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.2
+0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+1.0
+0.1
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.2
+0.3
+0.2
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.8
+0.1
+0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+1.2
-0.1
+0.1
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