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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8629 and 8630 are separated by 264 nucleotides
8630 and 8631 are separated by 832 nucleotides
8631 and 8632 are separated by 1458 nucleotides
8632 and 8633 are separated by 286 nucleotides
mRNA_261: 8629 - KOG1745 Histones H3 and H4, at 627,613 to 628,433
8629
mRNA_262: 8630 - HMMPfam-Flavin reductase like domain-PF01613, at 628,698 to 628,997
8630
mRNA_263: 8631 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 629,830 to 634,837
8631
mRNA_264: 8632 - BLAST phosphoglycerate mutase-like protein [Sanghuangporus ..., at 636,296 to 637,192
8632
mRNA_265: 8633 - K00876 udk, UCK uridine kinase, at 637,479 to 639,717
8633
Group
Condition
mRNA
_261
mRNA
_262
mRNA
_263
mRNA
_264
mRNA
_265
8629
8630
8631
8632
8633
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
-0.1
-0.1
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
N.D.
-1.0
+0.3
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
N.D.
-0.3
+0.3
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
N.D.
-0.5
-0.0
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
N.D.
-0.1
-0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
N.D.
-0.9
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.5
N.D.
+0.2
+0.0
-0.2
ypd buoyancy
40 hrs Low Buoyancy
+0.2
N.D.
-0.5
-0.1
+0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
+1.0
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
N.D.
+0.1
-0.1
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
N.D.
+0.2
-0.4
+0.4
auxotrophy
Dropout Complete
-0.6
N.D.
+0.6
-0.0
+0.3
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
+0.5
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.1
N.D.
-0.1
+0.1
+0.4
growth on ypd
YPD
+0.1
N.D.
-0.0
+0.2
+0.5
auxotrophy
YNB Glucose 75mM Methionine
-0.3
N.D.
+1.0
-0.1
+0.1
growth on ricinoleic acid
YNB Glucose
+0.3
N.D.
+1.0
-0.5
+0.1
growth on oleic acid
YNB Glucose
-0.0
N.D.
+0.6
-0.2
+0.5
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+0.5
-0.0
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.3
N.D.
+1.1
+0.1
+0.3
auxotrophy
YNB Glucose
+0.3
N.D.
+1.1
-0.2
+0.3
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