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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8630 and 8631 are separated by 832 nucleotides
8631 and 8632 are separated by 1458 nucleotides
8632 and 8633 are separated by 286 nucleotides
8633 and 8634 are separated by 141 nucleotides
mRNA_262: 8630 - HMMPfam-Flavin reductase like domain-PF01613, at 628,698 to 628,997
8630
mRNA_263: 8631 - K01537 E3.6.3.8 Ca2+-transporting ATPase, at 629,830 to 634,837
8631
mRNA_264: 8632 - BLAST phosphoglycerate mutase-like protein [Sanghuangporus ..., at 636,296 to 637,192
8632
mRNA_265: 8633 - K00876 udk, UCK uridine kinase, at 637,479 to 639,717
8633
mRNA_266: 8634 - KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, at 639,859 to 640,522
8634
Group
Condition
mRNA
_262
mRNA
_263
mRNA
_264
mRNA
_265
mRNA
_266
8630
8631
8632
8633
8634
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-1.0
+0.3
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.5
-0.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
-0.3
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.1
-0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.9
+0.3
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.5
-0.1
+0.4
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
+0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
+0.0
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.2
-0.4
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
+0.1
+0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+1.0
-0.4
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
+1.0
-0.5
+0.1
N.D.
growth on ypd
YPD
N.D.
-0.0
+0.2
+0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.5
+0.1
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.5
-0.0
+0.4
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.6
-0.2
+0.5
N.D.
auxotrophy
Dropout Complete
N.D.
+0.6
-0.0
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+1.0
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose
N.D.
+1.1
-0.2
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+1.1
+0.1
+0.3
N.D.
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