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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8633 and 8634 are separated by 141 nucleotides
8634 and 8635 are separated by 345 nucleotides
8635 and 8636 are separated by 253 nucleotides
8636 and 8637 are separated by 129 nucleotides
mRNA_265: 8633 - K00876 udk, UCK uridine kinase, at 637,479 to 639,717
8633
mRNA_266: 8634 - KOG0111 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, at 639,859 to 640,522
8634
mRNA_267: 8635 - K03381 catA catechol 1,2-dioxygenase, at 640,868 to 642,235
8635
mRNA_268: 8636 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 642,489 to 643,919
8636
mRNA_269: 8637 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 644,049 to 645,349
8637
Group
Condition
mRNA
_265
mRNA
_266
mRNA
_267
mRNA
_268
mRNA
_269
8633
8634
8635
8636
8637
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
N.D.
-2.7
-0.5
+0.1
growth on oleic acid
YNB Glucose
+0.5
N.D.
-1.9
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
N.D.
-0.6
-0.4
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
N.D.
-1.6
+0.7
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
N.D.
-1.0
+0.2
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
-0.2
-0.3
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
N.D.
-0.7
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.6
-0.0
+0.3
growth on ypd
YPD
+0.5
N.D.
-0.6
-0.2
-0.3
auxotrophy
YNB Glucose 75mM Arginine
+0.3
N.D.
-0.4
-0.1
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
N.D.
-0.8
-0.1
+0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.0
-0.6
+0.2
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
+0.2
-0.2
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
+0.5
+0.2
-0.4
auxotrophy
YNB Glucose
+0.3
N.D.
+0.2
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
N.D.
+0.6
+0.1
+0.0
auxotrophy
Dropout Complete
+0.3
N.D.
+0.6
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+0.4
N.D.
-0.2
+0.5
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.4
N.D.
-0.0
+0.3
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.4
N.D.
+0.6
-0.4
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
N.D.
+1.6
-0.7
+0.8
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