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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8635 and 8636 are separated by 253 nucleotides
8636 and 8637 are separated by 129 nucleotides
8637 and 8638 are separated by 272 nucleotides
8638 and 8639 are separated by 317 nucleotides
mRNA_267: 8635 - K03381 catA catechol 1,2-dioxygenase, at 640,868 to 642,235
8635
mRNA_268: 8636 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 642,489 to 643,919
8636
mRNA_269: 8637 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 644,049 to 645,349
8637
mRNA_270: 8638 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 645,622 to 646,120
8638
mRNA_271: 8639 - K11262 ACACA acetyl-CoA carboxylase / biotin carboxylase 1, at 646,438 to 653,784
8639
Group
Condition
mRNA
_267
mRNA
_268
mRNA
_269
mRNA
_270
mRNA
_271
8635
8636
8637
8638
8639
facs on lipid accumulation
Sorted High BODIPY Gate
-2.7
-0.5
+0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
-1.9
-0.3
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
+0.2
-0.3
N.D.
N.D.
growth on ypd
YPD
-0.6
-0.2
-0.3
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
-0.1
-0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
-0.4
+0.2
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.3
-0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.4
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.6
+0.7
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.0
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.8
-0.1
+0.5
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.6
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
+0.2
-0.2
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.2
+0.2
-0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.5
+0.2
-0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.5
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
+0.6
-0.1
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.3
+0.1
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.6
-0.4
+0.4
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.6
+0.1
+0.0
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.6
-0.7
+0.8
N.D.
N.D.
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