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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8638 and 8639 are separated by 317 nucleotides
8639 and 8640 are separated by 531 nucleotides
8640 and 8641 are separated by 380 nucleotides
8641 and 8642 are separated by 71 nucleotides
mRNA_270: 8638 - BLAST protein of unknown function [Taphrina deformans PYCC ..., at 645,622 to 646,120
8638
mRNA_271: 8639 - K11262 ACACA acetyl-CoA carboxylase / biotin carboxylase 1, at 646,438 to 653,784
8639
mRNA_272: 8640 - KOG4178 Soluble epoxide hydrolase, at 654,316 to 655,397
8640
mRNA_273: 8641 - K15174 PAF1 RNA polymerase II-associated factor 1, at 655,778 to 657,591
8641
mRNA_274: 8642 - BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena], at 657,663 to 658,330
8642
Group
Condition
mRNA
_270
mRNA
_271
mRNA
_272
mRNA
_273
mRNA
_274
8638
8639
8640
8641
8642
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-2.4
-0.3
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-1.4
-0.7
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-1.8
-0.3
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
-1.3
-0.6
+0.7
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-1.4
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
-2.1
-0.1
+1.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-1.9
+1.0
+0.4
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.2
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.5
-1.7
+1.0
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.5
-0.1
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-1.2
-0.6
+1.6
auxotrophy
Dropout Complete
N.D.
N.D.
-0.9
+1.0
+0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.2
+1.3
-0.3
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
+1.2
-0.2
growth on ypd
YPD
N.D.
N.D.
-0.3
+1.1
+0.1
auxotrophy
YNB Glucose
N.D.
N.D.
-0.1
+1.4
-0.4
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.0
+0.4
+0.8
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.3
-0.0
+1.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.5
+0.6
+1.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.2
-0.3
+2.1
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.3
+1.0
+1.3
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