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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8641 and 8642 are separated by 71 nucleotides
8642 and 8643 are separated by 1111 nucleotides
8643 and 8644 are separated by 230 nucleotides
8644 and 8645 are separated by 1091 nucleotides
mRNA_273: 8641 - K15174 PAF1 RNA polymerase II-associated factor 1, at 655,778 to 657,591
8641
mRNA_274: 8642 - BLAST Putative Pc16g06240 protein [Torrubiella hemipterigena], at 657,663 to 658,330
8642
mRNA_275: 8643 - BLAST nitrogen assimilation transcription factor [Rhodo..., at 659,442 to 660,346
8643
mRNA_276: 8644 - K03679 RRP4, EXOSC2 exosome complex component RRP4, at 660,577 to 661,885
8644
mRNA_277: 8645 - KOG3122 DNA-directed RNA polymerase III subunit, at 662,977 to 664,495
8645
Group
Condition
mRNA
_273
mRNA
_274
mRNA
_275
mRNA
_276
mRNA
_277
8641
8642
8643
8644
8645
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
+0.1
-1.6
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.1
-1.1
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.7
+1.0
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.3
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.5
-0.6
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
+0.0
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.6
+0.7
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
+0.4
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+1.2
-0.8
N.D.
N.D.
auxotrophy
YNB Glucose
+1.4
-0.4
-0.1
N.D.
N.D.
growth on oleic acid
YNB Glucose
+0.4
+0.8
-0.2
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.6
+1.6
+0.4
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+1.4
-0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+1.3
+0.5
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+1.0
+0.4
+0.3
N.D.
N.D.
growth on ypd
YPD
+1.1
+0.1
+0.6
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+1.2
-0.2
+1.0
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+1.0
+1.3
-0.2
N.D.
N.D.
auxotrophy
Dropout Complete
+1.0
+0.1
+1.1
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
+2.1
+0.5
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+1.3
-0.3
+1.6
N.D.
N.D.
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