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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8649 and 8650 are separated by 948 nucleotides
8650 and 8651 are separated by 698 nucleotides
8651 and 8652 are separated by 768 nucleotides
8652 and 8653 are separated by 339 nucleotides
mRNA_281: 8649 - KOG0653 Cyclin B and related kinase-activating proteins, at 669,704 to 671,491
8649
mRNA_282: 8650 - Hypothetical Protein, at 672,440 to 673,215
8650
mRNA_283: 8651 - K00872 thrB1 homoserine kinase, at 673,914 to 675,244
8651
mRNA_284: 8652 - K01762 ACS 1-aminocyclopropane-1-carboxylate synthase, at 676,013 to 677,803
8652
mRNA_285: 8653 - Hypothetical Protein, at 678,143 to 678,782
8653
Group
Condition
mRNA
_281
mRNA
_282
mRNA
_283
mRNA
_284
mRNA
_285
8649
8650
8651
8652
8653
auxotrophy
Dropout Complete
N.D.
-0.0
N.D.
-0.9
-0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
N.D.
-0.5
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.1
N.D.
-0.4
-0.1
auxotrophy
YNB Glucose
N.D.
+0.3
N.D.
-0.1
-0.7
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.1
N.D.
-0.3
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.4
N.D.
+0.4
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
N.D.
-0.4
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.0
N.D.
-0.4
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
N.D.
+0.2
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.2
N.D.
+0.3
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
N.D.
-0.2
+0.8
growth on oleic acid
YNB Glucose
N.D.
+0.3
N.D.
+0.1
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
N.D.
+0.0
+0.4
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
N.D.
+0.0
+0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.6
N.D.
+0.1
+1.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.0
N.D.
+0.6
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
N.D.
+0.1
+0.9
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.2
N.D.
-0.1
+1.0
growth on ypd
YPD
N.D.
+0.1
N.D.
+0.6
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.4
N.D.
+1.0
+0.7
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