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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8651 and 8652 are separated by 768 nucleotides
8652 and 8653 are separated by 339 nucleotides
8653 and 8654 are separated by 728 nucleotides
8654 and 8655 are separated by 253 nucleotides
mRNA_283: 8651 - K00872 thrB1 homoserine kinase, at 673,914 to 675,244
8651
mRNA_284: 8652 - K01762 ACS 1-aminocyclopropane-1-carboxylate synthase, at 676,013 to 677,803
8652
mRNA_285: 8653 - Hypothetical Protein, at 678,143 to 678,782
8653
mRNA_286: 8654 - SUPERFAMILY--SSF52047, at 679,511 to 681,745
8654
mRNA_287: 8655 - KOG1861 Leucine permease transcriptional regulator, at 681,999 to 683,854
8655
Group
Condition
mRNA
_283
mRNA
_284
mRNA
_285
mRNA
_286
mRNA
_287
8651
8652
8653
8654
8655
auxotrophy
Dropout Complete
N.D.
-0.9
-0.7
+0.2
N.D.
auxotrophy
YNB Glucose
N.D.
-0.1
-0.7
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
-0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.4
-0.2
+0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.3
-0.1
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.5
-0.4
+0.6
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.4
-0.4
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.2
+0.2
-0.3
N.D.
growth on oleic acid
YNB Glucose
N.D.
+0.1
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.3
-0.2
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.6
+0.2
-0.5
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
+0.6
-0.2
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
-0.4
+0.2
+0.8
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
+0.4
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.1
+1.0
-0.1
N.D.
growth on ypd
YPD
N.D.
+0.6
+0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.2
+0.8
+0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+1.0
+0.7
-0.5
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.1
+0.9
+0.7
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.1
+1.2
+0.8
N.D.
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