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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8654 and 8655 are separated by 253 nucleotides
8655 and 8656 are separated by 194 nucleotides
8656 and 8657 are separated by 136 nucleotides
8657 and 8658 are separated by 358 nucleotides
mRNA_286: 8654 - SUPERFAMILY--SSF52047, at 679,511 to 681,745
8654
mRNA_287: 8655 - KOG1861 Leucine permease transcriptional regulator, at 681,999 to 683,854
8655
mRNA_288: 8656 - K00521 E1.16.1.7 ferric-chelate reductase, at 684,049 to 686,611
8656
mRNA_289: 8657 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 686,748 to 688,788
8657
mRNA_290: 8658 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSitePatterns-Sugar transport proteins signature 1.-PS00216,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 689,147 to 690,940
8658
Group
Condition
mRNA
_286
mRNA
_287
mRNA
_288
mRNA
_289
mRNA
_290
8654
8655
8656
8657
8658
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
-0.9
-0.1
+0.3
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
-0.5
+0.0
-0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.2
N.D.
-0.3
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.5
N.D.
+0.0
-0.2
+0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
N.D.
-0.3
-0.1
+0.5
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
-0.3
+0.1
-0.2
growth on oleic acid
YNB Glucose
-0.1
N.D.
-0.0
+0.1
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
-0.3
+0.2
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
N.D.
-0.3
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
N.D.
+0.1
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
N.D.
-0.3
-0.2
-0.0
growth on oleic acid
YNB Oleic Acid
+0.3
N.D.
+0.1
-0.1
+0.0
growth on ypd
YPD
-0.1
N.D.
+0.3
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
N.D.
-0.0
+0.1
-0.2
auxotrophy
Dropout Complete
+0.2
N.D.
+0.3
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
N.D.
-0.0
+0.0
-0.3
auxotrophy
YNB Glucose
+0.1
N.D.
+0.2
+0.3
-0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
N.D.
+0.1
+0.2
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.3
N.D.
+0.2
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.8
N.D.
-0.1
-0.2
+0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.6
N.D.
+0.2
-0.0
+0.4
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