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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8656 and 8657 are separated by 136 nucleotides
8657 and 8658 are separated by 358 nucleotides
8658 and 8659 are separated by 570 nucleotides
8659 and 8660 are separated by 162 nucleotides
mRNA_288: 8656 - K00521 E1.16.1.7 ferric-chelate reductase, at 684,049 to 686,611
8656
mRNA_289: 8657 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 686,748 to 688,788
8657
mRNA_290: 8658 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSitePatterns-Sugar transport proteins signature 1.-PS00216,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 689,147 to 690,940
8658
mRNA_291: 8659 - K03012 RPB4, POLR2D DNA-directed RNA polymerase II subunit RPB4, at 691,511 to 692,003
8659
mRNA_292: 8660 - HMMPfam-Endoplasmic reticulum-based factor for assembly of V-ATPase-PF11712, at 692,166 to 693,130
8660
Group
Condition
mRNA
_288
mRNA
_289
mRNA
_290
mRNA
_291
mRNA
_292
8656
8657
8658
8659
8660
ypd buoyancy
40 hrs No Buoyancy Separation
-0.9
-0.1
+0.3
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.2
-0.0
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.0
-0.0
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
+0.1
-0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.0
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.3
+0.2
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
+0.3
-0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
+0.1
-0.2
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.0
+0.1
-0.1
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.3
+0.1
+0.2
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
+0.1
-0.1
+0.0
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.3
-0.1
+0.5
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-0.2
+0.4
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-0.2
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.2
-0.0
N.D.
N.D.
auxotrophy
Dropout Complete
+0.3
-0.1
+0.0
N.D.
N.D.
growth on ypd
YPD
+0.3
-0.0
+0.1
N.D.
N.D.
auxotrophy
YNB Glucose
+0.2
+0.3
-0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.1
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.2
+0.2
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.0
+0.4
N.D.
N.D.
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