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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8662 and 8663 are separated by 231 nucleotides
8663 and 8664 are separated by 125 nucleotides
8664 and 8665 are separated by 315 nucleotides
8665 and 8666 are separated by 2623 nucleotides
mRNA_294: 8662 - Hypothetical Protein, at 694,833 to 695,851
8662
mRNA_295: 8663 - KOG3069 Peroxisomal NUDIX hydrolase, at 696,083 to 698,097
8663
mRNA_296: 8664 - K20177 VPS3, TGFBRAP1 vacuolar protein sorting-associated protein 3, at 698,223 to 702,275
8664
mRNA_297: 8665 - Hypothetical Protein, at 702,591 to 702,936
8665
mRNA_298: 8666 - KOG0725 Reductases with broad range of substrate specificities, at 705,560 to 707,244
8666
Group
Condition
mRNA
_294
mRNA
_295
mRNA
_296
mRNA
_297
mRNA
_298
8662
8663
8664
8665
8666
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.0
-5.3
-0.3
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
+0.3
-5.1
-0.5
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-4.9
+0.0
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-0.7
-2.0
+0.3
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.4
-1.3
+0.4
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-0.4
-0.8
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.4
-0.5
-0.0
+0.2
growth on oleic acid
YNB Glucose
N.D.
+0.2
-1.2
+0.3
+0.1
auxotrophy
YNB Glucose
N.D.
-0.1
-1.1
+0.3
+0.4
auxotrophy
Dropout Complete
N.D.
-0.5
-0.6
+0.2
+0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.1
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.2
-1.0
+0.5
-0.0
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.3
-0.6
+0.2
+0.4
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.7
-0.3
-0.4
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-0.1
-0.7
+0.5
+0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.0
+0.3
-0.2
+0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
-0.1
+0.7
+0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.6
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.2
+0.1
+0.2
+0.3
growth on ricinoleic acid
YNB Glucose
N.D.
-0.1
+0.4
+0.3
-0.1
growth on ypd
YPD
N.D.
+0.1
+0.5
+0.4
-0.0
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