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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8664 and 8665 are separated by 315 nucleotides
8665 and 8666 are separated by 2623 nucleotides
8666 and 8667 are separated by 238 nucleotides
8667 and 8668 are separated by 635 nucleotides
mRNA_296: 8664 - K20177 VPS3, TGFBRAP1 vacuolar protein sorting-associated protein 3, at 698,223 to 702,275
8664
mRNA_297: 8665 - Hypothetical Protein, at 702,591 to 702,936
8665
mRNA_298: 8666 - KOG0725 Reductases with broad range of substrate specificities, at 705,560 to 707,244
8666
mRNA_299: 8667 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 707,483 to 708,587
8667
mRNA_300: 8668 - BLAST transcription factor hoxa13 [Aspergillus bombycis], at 709,223 to 712,870
8668
Group
Condition
mRNA
_296
mRNA
_297
mRNA
_298
mRNA
_299
mRNA
_300
8664
8665
8666
8667
8668
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.0
+0.3
-0.3
-4.8
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.3
+0.4
-0.3
-4.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-5.1
-0.5
+0.1
+0.0
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-4.9
+0.0
-0.1
+0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
-5.3
-0.3
+0.1
+0.2
+0.1
growth on oleic acid
YNB Oleic Acid
-1.0
+0.5
-0.0
-2.3
-0.3
growth on oleic acid
YNB Glucose
-1.2
+0.3
+0.1
-0.8
-0.0
ypd buoyancy
40 hrs No Buoyancy Separation
+0.7
-0.3
-0.4
-0.2
-1.4
auxotrophy
YNB Glucose
-1.1
+0.3
+0.4
-0.4
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
-0.0
+0.2
-0.3
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.6
+0.2
+0.4
-0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.1
-0.1
+0.2
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.8
-0.1
+0.4
+0.1
-0.0
auxotrophy
Dropout Complete
-0.6
+0.2
+0.3
-0.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.6
-0.2
-0.1
-0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.7
+0.0
-0.3
-0.3
-0.3
growth on ricinoleic acid
YNB Glucose
+0.4
+0.3
-0.1
-0.5
-0.2
auxotrophy
YNB Glucose 75mM Methionine
-0.7
+0.5
+0.4
-0.0
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
+0.2
+0.3
+0.0
+0.2
growth on ypd
YPD
+0.5
+0.4
-0.0
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.2
+0.1
+0.6
+0.3
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