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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8667 and 8668 are separated by 635 nucleotides
8668 and 8669 are separated by 2621 nucleotides
8669 and 8670 are separated by 1009 nucleotides
8670 and 8671 are separated by 717 nucleotides
mRNA_299: 8667 - ProSiteProfiles-SET domain profile.-PS50280,SUPERFAMILY--SSF82199, at 707,483 to 708,587
8667
mRNA_300: 8668 - BLAST transcription factor hoxa13 [Aspergillus bombycis], at 709,223 to 712,870
8668
mRNA_301: 8669 - Hypothetical Protein, at 715,492 to 716,127
8669
mRNA_302: 8670 - K00668 FAS1 fatty acid synthase subunit beta, fungi type, at 717,137 to 721,125
8670
mRNA_303: 8671 - K00222 TM7SF2, ERG24 Delta14-sterol reductase, at 721,843 to 723,815
8671
Group
Condition
mRNA
_299
mRNA
_300
mRNA
_301
mRNA
_302
mRNA
_303
8667
8668
8669
8670
8671
growth on ricinoleic acid
YNB Ricinoleic Acid
-4.8
+0.2
-0.8
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-4.2
-0.0
-0.4
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-2.3
-0.3
+0.4
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-1.4
-0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.5
-0.5
N.D.
N.D.
auxotrophy
YNB Glucose
-0.4
-0.2
-0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-0.5
-0.2
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.3
-0.3
N.D.
N.D.
auxotrophy
Dropout Complete
-0.0
-0.3
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.3
-0.0
N.D.
N.D.
growth on oleic acid
YNB Glucose
-0.8
-0.0
+0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.5
+0.0
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.0
-0.2
+0.0
N.D.
N.D.
growth on ypd
YPD
+0.1
+0.1
-0.3
N.D.
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.0
+0.1
+0.0
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.3
+0.1
+0.4
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
+0.4
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
+0.1
+0.2
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.0
+0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
+0.2
+0.7
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
+0.3
+0.3
N.D.
N.D.
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