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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8672 and 8673 are separated by 1033 nucleotides
8673 and 8674 are separated by 490 nucleotides
8674 and 8675 are separated by 343 nucleotides
8675 and 8676 are separated by 351 nucleotides
mRNA_304: 8672 - HMMPfam-Domain of unknown function (DUF1917)-PF08939,SUPERFAMILY--SSF55418, at 724,122 to 725,231
8672
mRNA_305: 8673 - HMMPfam-Peroxisomal biogenesis factor 11 (PEX11)-PF05648, at 726,265 to 727,388
8673
mRNA_306: 8674 - HMMPfam-Relaxase/Mobilisation nuclease domain-PF03432,ProSiteProfiles-Tudor domain profile.-PS50304,SMART-Tudor domain-SM00333,SUPERFAMILY--SSF63748, at 727,879 to 728,992
8674
mRNA_307: 8675 - K12195 CHMP6, VPS20 charged multivesicular body protein 6, at 729,336 to 730,471
8675
mRNA_308: 8676 - K07952 ARFRP1 ADP-ribosylation factor related protein 1, at 730,823 to 731,905
8676
Group
Condition
mRNA
_304
mRNA
_305
mRNA
_306
mRNA
_307
mRNA
_308
8672
8673
8674
8675
8676
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
-4.0
N.D.
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-3.5
N.D.
N.D.
+0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.9
N.D.
N.D.
-1.2
growth on oleic acid
YNB Oleic Acid
+0.0
-1.8
N.D.
N.D.
+0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.7
-0.4
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
-0.4
N.D.
N.D.
+0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
-0.8
N.D.
N.D.
-0.4
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-0.6
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.5
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
-0.2
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
N.D.
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.4
+0.1
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.1
N.D.
N.D.
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.4
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs High Buoyancy
+0.5
-0.2
N.D.
N.D.
-0.2
auxotrophy
YNB Glucose
+0.0
+0.2
N.D.
N.D.
-0.1
ypd buoyancy
40 hrs Median Buoyancy
+0.5
-0.3
N.D.
N.D.
-0.1
growth on oleic acid
YNB Glucose
-0.1
+0.2
N.D.
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.3
N.D.
N.D.
-0.3
auxotrophy
Dropout Complete
-0.2
+0.5
N.D.
N.D.
+0.1
growth on ypd
YPD
+0.6
+0.3
N.D.
N.D.
-0.2
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