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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8682 and 8683 are separated by 224 nucleotides
8683 and 8684 are separated by 321 nucleotides
8684 and 8685 are separated by 201 nucleotides
8685 and 8686 are separated by 81 nucleotides
mRNA_314: 8682 - K13091 RBM39, RNPC2 RNA-binding protein 39, at 749,609 to 751,814
8682
mRNA_315: 8683 - Hypothetical Protein, at 752,039 to 753,953
8683
mRNA_316: 8684 - K18802 DUG3 glutamine amidotransferase, at 754,275 to 756,026
8684
mRNA_317: 8685 - HMMPfam-DnaJ domain-PF00226,PRINTS-DnaJ domain signature-PR00625,ProSitePatterns-Nt-dnaJ domain signature.-PS00636,ProSiteProfiles-dnaJ domain profile.-PS50076,ProSiteProfiles-IQ motif profile.-PS50096,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 756,228 to 757,512
8685
mRNA_318: 8686 - Interpro Fungal domain of unknown function (DUF1750), at 757,594 to 759,249
8686
Group
Condition
mRNA
_314
mRNA
_315
mRNA
_316
mRNA
_317
mRNA
_318
8682
8683
8684
8685
8686
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.3
-0.5
-0.4
-1.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-0.1
-0.1
-0.6
-1.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.1
-0.4
-0.0
-1.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.1
-0.4
-0.1
-1.3
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.1
+0.2
-0.0
-1.8
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.1
-0.2
-0.1
-0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-0.1
+0.1
-0.4
-0.6
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.0
+0.1
-0.2
-0.8
growth on ricinoleic acid
YNB Glucose
N.D.
+0.3
-0.3
+0.3
-0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-0.0
-0.2
+0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.0
-0.2
+0.2
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.2
+0.1
-0.0
-0.0
ypd buoyancy
40 hrs Low Buoyancy
N.D.
+0.1
+0.2
-0.0
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.1
-0.1
+0.5
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
+0.0
-0.0
-0.0
+0.5
auxotrophy
Dropout Complete
N.D.
+0.1
+0.7
+0.2
-0.3
growth on oleic acid
YNB Glucose
N.D.
+0.0
+0.4
-0.1
+0.5
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.2
+0.4
+0.3
-0.1
auxotrophy
YNB Glucose
N.D.
+0.4
+0.6
+0.1
-0.2
growth on ypd
YPD
N.D.
+0.1
-0.0
+0.4
+0.5
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.2
+0.4
+0.6
+0.9
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