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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8685 and 8686 are separated by 81 nucleotides
8686 and 8687 are separated by 85 nucleotides
8687 and 8688 are separated by 118 nucleotides
8688 and 8689 are separated by 57 nucleotides
mRNA_317: 8685 - HMMPfam-DnaJ domain-PF00226,PRINTS-DnaJ domain signature-PR00625,ProSitePatterns-Nt-dnaJ domain signature.-PS00636,ProSiteProfiles-dnaJ domain profile.-PS50076,ProSiteProfiles-IQ motif profile.-PS50096,SMART-DnaJ molecular chaperone homology domain-SM00271,SUPERFAMILY--SSF46565, at 756,228 to 757,512
8685
mRNA_318: 8686 - Interpro Fungal domain of unknown function (DUF1750), at 757,594 to 759,249
8686
mRNA_319: 8687 - KOG2134 Polynucleotide kinase 3' phosphatase, at 759,335 to 760,537
8687
mRNA_320: 8688 - Hypothetical Protein, at 760,656 to 762,781
8688
mRNA_321: 8689 - KOG4317 Predicted Zn-finger protein, at 762,839 to 764,616
8689
Group
Condition
mRNA
_317
mRNA
_318
mRNA
_319
mRNA
_320
mRNA
_321
8685
8686
8687
8688
8689
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-1.5
-0.5
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.6
-1.3
+0.2
-0.6
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-1.8
+0.2
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.9
-0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-1.3
+0.4
-0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.1
-1.3
+0.3
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.8
+0.6
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.6
+0.6
-0.3
N.D.
growth on ricinoleic acid
YNB Glucose
+0.3
-0.6
-0.6
+0.4
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.2
-0.3
+0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
-0.2
-0.3
+0.3
N.D.
auxotrophy
Dropout Complete
+0.2
-0.3
-0.4
+0.6
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
-0.5
+0.3
N.D.
growth on ypd
YPD
+0.4
+0.5
-0.3
-0.5
N.D.
auxotrophy
YNB Glucose
+0.1
-0.2
-0.3
+0.6
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
-0.0
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
+0.0
+0.2
+0.3
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.5
+0.0
+0.2
N.D.
growth on oleic acid
YNB Oleic Acid
-0.0
+0.5
-0.3
+0.4
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
-0.1
-0.1
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.6
+0.9
-0.6
+0.4
N.D.
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