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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8692 and 8693 are separated by 306 nucleotides
8693 and 8694 are separated by 209 nucleotides
8694 and 8695 are separated by 226 nucleotides
8695 and 8696 are separated by 264 nucleotides
mRNA_324: 8692 - K00135 gabD succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase, at 767,858 to 770,027
8692
mRNA_325: 8693 - KOG0054 Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily, at 770,334 to 776,057
8693
mRNA_326: 8694 - K17983 SHE9 sensitive to high expression protein 9, mitochondrial, at 776,267 to 777,781
8694
mRNA_327: 8695 - KOG0378 40S ribosomal protein S4, at 778,008 to 779,249
8695
mRNA_328: 8696 - K02987 RP-S4e, RPS4 small subunit ribosomal protein S4e, at 779,514 to 780,910
8696
Group
Condition
mRNA
_324
mRNA
_325
mRNA
_326
mRNA
_327
mRNA
_328
8692
8693
8694
8695
8696
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.9
+0.3
-1.3
-1.3
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.7
-0.1
-0.1
-1.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
-0.1
-0.3
-0.9
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.4
-0.1
-1.2
-0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
+0.0
-0.5
-0.6
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
-0.3
-0.9
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.1
-0.7
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.9
+0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.2
-0.3
-0.3
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.4
+0.0
-0.3
+0.1
N.D.
growth on oleic acid
YNB Glucose
-0.6
-0.1
+0.1
+0.1
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.1
-0.6
+1.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.3
+0.8
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
+0.1
-0.4
+0.8
N.D.
growth on ypd
YPD
+0.4
-0.0
+1.0
-0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
+0.2
-0.5
+1.8
N.D.
auxotrophy
Dropout Complete
-0.1
+0.2
-0.7
+1.7
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.3
-0.1
-0.5
+1.7
N.D.
auxotrophy
YNB Glucose
-0.2
+0.3
-0.9
+2.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
+0.2
-0.5
+2.1
N.D.
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