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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8697 and 8698 are separated by 625 nucleotides
8698 and 8699 are separated by 1687 nucleotides
8699 and 8700 are separated by 349 nucleotides
8700 and 8701 are separated by 582 nucleotides
mRNA_329: 8697 - Hypothetical Protein, at 781,118 to 782,181
8697
mRNA_330: 8698 - KOG2018 Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis, at 782,807 to 784,581
8698
mRNA_331: 8699 - K03940 NDUFS7 NADH dehydrogenase (ubiquinone) Fe-S protein 7, at 786,269 to 787,745
8699
mRNA_332: 8700 - HMMPfam-DSS1/SEM1 family-PF05160, at 788,095 to 788,775
8700
mRNA_333: 8701 - Hypothetical Protein, at 789,358 to 791,102
8701
Group
Condition
mRNA
_329
mRNA
_330
mRNA
_331
mRNA
_332
mRNA
_333
8697
8698
8699
8700
8701
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
-0.5
-0.8
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.0
-1.0
-0.3
N.D.
+0.1
growth on oleic acid
YNB Oleic Acid
+0.4
-0.5
-0.6
N.D.
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.9
-0.7
N.D.
+0.0
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
-0.5
+0.0
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.2
-0.7
N.D.
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
-0.6
N.D.
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
+0.1
-0.6
N.D.
-0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.1
-0.5
N.D.
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.6
+0.6
-0.9
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
+0.2
N.D.
+0.1
growth on ricinoleic acid
YNB Glucose
+0.5
+0.2
-0.7
N.D.
-0.1
growth on oleic acid
YNB Glucose
+0.2
+0.3
-0.4
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.1
-0.0
N.D.
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.7
+0.2
-0.4
N.D.
-0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.1
+0.4
-0.4
N.D.
+0.1
auxotrophy
Dropout Complete
+0.1
-0.1
+0.6
N.D.
-0.2
growth on ypd
YPD
+0.3
-0.3
+0.6
N.D.
+0.1
auxotrophy
YNB Glucose
+0.3
+0.2
+0.3
N.D.
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
-0.1
+0.8
N.D.
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.2
+0.4
+0.6
N.D.
+0.0
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