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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8703 and 8704 are separated by 463 nucleotides
8704 and 8705 are separated by 297 nucleotides
8705 and 8706 are separated by 527 nucleotides
8706 and 8707 overlap by 4 nucleotides
mRNA_335: 8703 - BLAST LOC100145131 protein [Xenopus tropicalis], at 794,212 to 794,991
8703
mRNA_336: 8704 - BLAST AGAP003941-PA [Anopheles gambiae str. PEST], at 795,455 to 795,670
8704
mRNA_337: 8705 - HMMPfam-Glycosyl hydrolases family 17-PF00332,SUPERFAMILY--SSF51445, at 795,968 to 797,601
8705
mRNA_338: 8706 - Hypothetical Protein, at 798,129 to 798,620
8706
mRNA_339: 8707 - K01693 hisB imidazoleglycerol-phosphate dehydratase, at 798,617 to 799,510
8707
Group
Condition
mRNA
_335
mRNA
_336
mRNA
_337
mRNA
_338
mRNA
_339
8703
8704
8705
8706
8707
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.3
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.2
-0.8
N.D.
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.0
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.1
-0.3
N.D.
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
-0.1
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.0
-0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.1
-0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.0
+0.0
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.4
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.3
-0.2
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.1
-0.0
N.D.
growth on oleic acid
YNB Glucose
N.D.
N.D.
-0.0
+0.2
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.3
-0.1
N.D.
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.0
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.2
+0.4
N.D.
auxotrophy
Dropout Complete
N.D.
N.D.
+0.2
+0.2
N.D.
auxotrophy
YNB Glucose
N.D.
N.D.
+0.2
+0.2
N.D.
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.1
+0.3
N.D.
growth on ypd
YPD
N.D.
N.D.
+0.6
+0.4
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.4
+0.8
N.D.
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