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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8705 and 8706 are separated by 527 nucleotides
8706 and 8707 overlap by 4 nucleotides
8707 and 8708 are separated by 462 nucleotides
8708 and 8709 are separated by 188 nucleotides
mRNA_337: 8705 - HMMPfam-Glycosyl hydrolases family 17-PF00332,SUPERFAMILY--SSF51445, at 795,968 to 797,601
8705
mRNA_338: 8706 - Hypothetical Protein, at 798,129 to 798,620
8706
mRNA_339: 8707 - K01693 hisB imidazoleglycerol-phosphate dehydratase, at 798,617 to 799,510
8707
mRNA_340: 8708 - KOG1271 Methyltransferases, at 799,973 to 801,137
8708
mRNA_341: 8709 - K00860 cysC adenylylsulfate kinase, at 801,326 to 802,147
8709
Group
Condition
mRNA
_337
mRNA
_338
mRNA
_339
mRNA
_340
mRNA
_341
8705
8706
8707
8708
8709
auxotrophy
YNB Glucose
+0.2
+0.2
N.D.
-0.4
-3.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
+0.3
N.D.
-0.2
-3.0
growth on ricinoleic acid
YNB Glucose
+0.0
+0.2
N.D.
-0.1
-2.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.2
N.D.
+0.6
-2.9
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.1
N.D.
+0.1
-2.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.1
N.D.
+0.0
-2.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.8
N.D.
+0.3
-1.6
growth on oleic acid
YNB Glucose
-0.0
+0.2
N.D.
+0.3
-2.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.0
+0.0
N.D.
-0.6
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.0
N.D.
+0.1
-1.0
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.4
N.D.
+0.1
+0.0
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.3
N.D.
+0.0
-0.0
auxotrophy
YNB Glucose 75mM Methionine
-0.2
+0.4
N.D.
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
-0.1
-0.1
N.D.
+0.4
-0.3
auxotrophy
Dropout Complete
+0.2
+0.2
N.D.
-0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
-0.3
N.D.
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.2
N.D.
+0.8
-0.5
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
N.D.
+0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.8
N.D.
-0.3
-0.1
growth on ypd
YPD
+0.6
+0.4
N.D.
+0.3
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.3
N.D.
+0.6
+1.1
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