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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8708 and 8709 are separated by 188 nucleotides
8709 and 8710 are separated by 268 nucleotides
8710 and 8711 are separated by 59 nucleotides
8711 and 8712 are separated by 167 nucleotides
mRNA_340: 8708 - KOG1271 Methyltransferases, at 799,973 to 801,137
8708
mRNA_341: 8709 - K00860 cysC adenylylsulfate kinase, at 801,326 to 802,147
8709
mRNA_342: 8710 - SUPERFAMILY--SSF54285, at 802,416 to 802,761
8710
mRNA_343: 8711 - HMMPfam-Domain of unknown function (DUF4078)-PF13300, at 802,821 to 804,087
8711
mRNA_344: 8712 - K00914 PIK3C3, VPS34 phosphatidylinositol 3-kinase, at 804,255 to 807,496
8712
Group
Condition
mRNA
_340
mRNA
_341
mRNA
_342
mRNA
_343
mRNA
_344
8708
8709
8710
8711
8712
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-1.0
-0.4
-3.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-2.4
+0.1
-2.1
N.D.
auxotrophy
YNB Glucose
-0.4
-3.0
+0.0
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
-2.8
+0.2
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.2
-3.0
+0.0
+0.6
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
-2.0
-0.1
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.6
-2.9
+0.0
-0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.0
+0.0
+0.0
-1.8
N.D.
growth on oleic acid
YNB Glucose
+0.3
-2.3
+0.2
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.6
-0.7
-0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.3
-1.6
-0.1
-0.1
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.3
-0.1
-0.6
+0.3
N.D.
growth on ypd
YPD
+0.3
+0.1
-0.5
-0.5
N.D.
auxotrophy
Dropout Complete
-0.3
-0.1
+0.0
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.0
-0.0
-0.1
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.1
+0.0
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.1
+0.2
+0.4
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.2
-0.4
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
+0.4
-0.3
+0.3
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.8
-0.5
-0.0
+0.5
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.6
+1.1
-0.0
+0.6
N.D.
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