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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8709 and 8710 are separated by 268 nucleotides
8710 and 8711 are separated by 59 nucleotides
8711 and 8712 are separated by 167 nucleotides
8712 and 8713 are separated by 336 nucleotides
mRNA_341: 8709 - K00860 cysC adenylylsulfate kinase, at 801,326 to 802,147
8709
mRNA_342: 8710 - SUPERFAMILY--SSF54285, at 802,416 to 802,761
8710
mRNA_343: 8711 - HMMPfam-Domain of unknown function (DUF4078)-PF13300, at 802,821 to 804,087
8711
mRNA_344: 8712 - K00914 PIK3C3, VPS34 phosphatidylinositol 3-kinase, at 804,255 to 807,496
8712
mRNA_345: 8713 - HMMPfam-Mis12-Mtw1 protein family-PF08202, at 807,833 to 810,278
8713
Group
Condition
mRNA
_341
mRNA
_342
mRNA
_343
mRNA
_344
mRNA
_345
8709
8710
8711
8712
8713
facs on lipid accumulation
Sorted Low BODIPY Gate
-1.0
-0.4
-3.0
N.D.
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-2.4
+0.1
-2.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-2.9
+0.0
-0.1
N.D.
N.D.
auxotrophy
YNB Glucose
-3.0
+0.0
+0.3
N.D.
N.D.
growth on ricinoleic acid
YNB Glucose
-2.8
+0.2
-0.0
N.D.
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-2.0
-0.1
-0.4
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-3.0
+0.0
+0.6
N.D.
N.D.
growth on oleic acid
YNB Glucose
-2.3
+0.2
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.6
-0.1
-0.1
N.D.
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
+0.0
-1.8
N.D.
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.7
-0.1
-0.3
N.D.
N.D.
growth on ypd
YPD
+0.1
-0.5
-0.5
N.D.
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
-0.1
-0.6
+0.3
N.D.
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
-0.2
N.D.
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
-0.2
+0.1
N.D.
N.D.
auxotrophy
Dropout Complete
-0.1
+0.0
-0.1
N.D.
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.4
+0.1
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
-0.0
+0.5
N.D.
N.D.
growth on oleic acid
YNB Oleic Acid
-0.3
+0.3
+0.2
N.D.
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
+0.2
+0.4
N.D.
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.1
-0.0
+0.6
N.D.
N.D.
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