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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8710 and 8711 are separated by 59 nucleotides
8711 and 8712 are separated by 167 nucleotides
8712 and 8713 are separated by 336 nucleotides
8713 and 8714 are separated by 656 nucleotides
mRNA_342: 8710 - SUPERFAMILY--SSF54285, at 802,416 to 802,761
8710
mRNA_343: 8711 - HMMPfam-Domain of unknown function (DUF4078)-PF13300, at 802,821 to 804,087
8711
mRNA_344: 8712 - K00914 PIK3C3, VPS34 phosphatidylinositol 3-kinase, at 804,255 to 807,496
8712
mRNA_345: 8713 - HMMPfam-Mis12-Mtw1 protein family-PF08202, at 807,833 to 810,278
8713
mRNA_346: 8714 - KOG3113 Uncharacterized conserved protein, at 810,935 to 812,073
8714
Group
Condition
mRNA
_342
mRNA
_343
mRNA
_344
mRNA
_345
mRNA
_346
8710
8711
8712
8713
8714
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
-3.0
N.D.
N.D.
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
-2.1
N.D.
N.D.
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.0
-1.8
N.D.
N.D.
+0.5
ypd buoyancy
40 hrs Median Buoyancy
-0.4
+0.1
N.D.
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.2
+0.1
N.D.
N.D.
-0.5
growth on ypd
YPD
-0.5
-0.5
N.D.
N.D.
+0.4
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.2
N.D.
N.D.
-0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.1
N.D.
N.D.
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.4
N.D.
N.D.
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.6
+0.3
N.D.
N.D.
+0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.2
+0.4
N.D.
N.D.
-0.7
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
N.D.
N.D.
+0.3
auxotrophy
Dropout Complete
+0.0
-0.1
N.D.
N.D.
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.0
-0.1
N.D.
N.D.
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.0
+0.6
N.D.
N.D.
-0.5
auxotrophy
YNB Glucose 75mM Arginine
+0.0
+0.6
N.D.
N.D.
-0.4
growth on ricinoleic acid
YNB Glucose
+0.2
-0.0
N.D.
N.D.
+0.1
auxotrophy
YNB Glucose
+0.0
+0.3
N.D.
N.D.
+0.2
growth on oleic acid
YNB Oleic Acid
+0.3
+0.2
N.D.
N.D.
+0.4
growth on oleic acid
YNB Glucose
+0.2
+0.1
N.D.
N.D.
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.0
+0.5
N.D.
N.D.
+0.8
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