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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8712 and 8713 are separated by 336 nucleotides
8713 and 8714 are separated by 656 nucleotides
8714 and 8715 are separated by 189 nucleotides
8715 and 8716 are separated by 216 nucleotides
mRNA_344: 8712 - K00914 PIK3C3, VPS34 phosphatidylinositol 3-kinase, at 804,255 to 807,496
8712
mRNA_345: 8713 - HMMPfam-Mis12-Mtw1 protein family-PF08202, at 807,833 to 810,278
8713
mRNA_346: 8714 - KOG3113 Uncharacterized conserved protein, at 810,935 to 812,073
8714
mRNA_347: 8715 - K01358 clpP, CLPP ATP-dependent Clp protease, protease subunit, at 812,263 to 813,594
8715
mRNA_348: 8716 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 813,811 to 815,656
8716
Group
Condition
mRNA
_344
mRNA
_345
mRNA
_346
mRNA
_347
mRNA
_348
8712
8713
8714
8715
8716
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
-0.7
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
-0.4
-0.3
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
-0.5
-0.1
-0.0
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.5
+0.0
-0.0
auxotrophy
Dropout Complete
N.D.
N.D.
+0.0
-0.2
-0.1
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.2
+0.0
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.2
-0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.2
-0.2
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.2
-0.2
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
-0.1
+0.1
+0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
-0.5
+0.2
+0.4
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.1
-0.1
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
+0.3
-0.1
+0.0
growth on ypd
YPD
N.D.
N.D.
+0.4
+0.3
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
+0.5
-0.3
+0.2
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.4
+0.1
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
-0.1
+0.2
+0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
+0.7
-0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.1
+0.6
+0.2
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.7
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.8
+0.5
+0.2
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