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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8723 and 8724 are separated by 701 nucleotides
8724 and 8725 are separated by 260 nucleotides
8725 and 8726 are separated by 333 nucleotides
8726 and 8727 are separated by 252 nucleotides
mRNA_355: 8723 - Hypothetical Protein, at 830,801 to 831,631
8723
mRNA_356: 8724 - K02727 PSMA3 20S proteasome subunit alpha 7, at 832,333 to 833,691
8724
mRNA_357: 8725 - K01556 KYNU, kynU kynureninase, at 833,952 to 835,830
8725
mRNA_358: 8726 - KOG1515 Arylacetamide deacetylase, at 836,164 to 837,965
8726
mRNA_359: 8727 - BLAST minor histocompatibility antigen H13 [Kwoniella d..., at 838,218 to 839,816
8727
Group
Condition
mRNA
_355
mRNA
_356
mRNA
_357
mRNA
_358
mRNA
_359
8723
8724
8725
8726
8727
ypd buoyancy
40 hrs No Buoyancy Separation
-0.5
N.D.
-0.0
-2.7
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
N.D.
-1.0
-0.2
-0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
N.D.
-0.3
-0.6
-0.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.4
N.D.
-0.5
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
N.D.
-0.3
-0.1
-0.6
auxotrophy
Dropout Complete
-0.1
N.D.
-0.8
+0.1
-0.3
growth on ypd
YPD
-0.0
N.D.
-0.1
-0.6
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
N.D.
-0.4
+0.2
-0.6
ypd buoyancy
40 hrs Low Buoyancy
-0.0
N.D.
-0.4
-0.4
+0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
N.D.
+0.4
+0.5
-1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
N.D.
-1.2
+0.4
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
N.D.
+0.3
+0.2
-0.9
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.0
N.D.
-0.6
+0.4
-0.3
ypd buoyancy
40 hrs High Buoyancy
-0.0
N.D.
-0.3
-0.1
+0.0
auxotrophy
YNB Glucose 75mM Arginine
+0.1
N.D.
-0.4
+0.2
-0.3
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
N.D.
-0.3
+0.2
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.1
N.D.
+0.2
+0.6
-0.8
growth on ricinoleic acid
YNB Glucose
+0.1
N.D.
-0.0
-0.1
-0.1
auxotrophy
YNB Glucose
+0.3
N.D.
-0.1
+0.4
-0.5
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.2
+0.1
+0.3
growth on oleic acid
YNB Oleic Acid
+0.1
N.D.
-0.1
+0.4
+0.2
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