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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8725 and 8726 are separated by 333 nucleotides
8726 and 8727 are separated by 252 nucleotides
8727 and 8728 are separated by 349 nucleotides
8728 and 8729 are separated by 24 nucleotides
mRNA_357: 8725 - K01556 KYNU, kynU kynureninase, at 833,952 to 835,830
8725
mRNA_358: 8726 - KOG1515 Arylacetamide deacetylase, at 836,164 to 837,965
8726
mRNA_359: 8727 - BLAST minor histocompatibility antigen H13 [Kwoniella d..., at 838,218 to 839,816
8727
mRNA_360: 8728 - BLAST CBN-SNA-1 protein [Caenorhabditis brenneri], at 840,166 to 840,441
8728
mRNA_361: 8729 - Hypothetical Protein, at 840,466 to 840,977
8729
Group
Condition
mRNA
_357
mRNA
_358
mRNA
_359
mRNA
_360
mRNA
_361
8725
8726
8727
8728
8729
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
-2.7
-0.2
-0.6
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-0.6
-0.8
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
-0.2
-0.0
-0.2
N.D.
auxotrophy
Dropout Complete
-0.8
+0.1
-0.3
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.3
-0.1
-0.6
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.2
+0.4
-0.4
+0.2
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.4
-0.4
+0.1
-0.3
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.1
+0.0
-0.4
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
-0.1
-0.1
+0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
-0.9
-0.2
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.2
-0.6
+0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.4
+0.2
-0.3
-0.0
N.D.
growth on ypd
YPD
-0.1
-0.6
-0.1
+0.3
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.6
+0.4
-0.3
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.3
+0.2
-0.4
+0.2
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
+0.5
-1.2
+0.0
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
-0.1
-0.1
+0.1
N.D.
auxotrophy
YNB Glucose
-0.1
+0.4
-0.5
+0.0
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
+0.6
-0.8
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.2
+0.1
+0.3
+0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.4
+0.2
+0.1
N.D.
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