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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8733 and 8734 are separated by 280 nucleotides
8734 and 8735 are separated by 569 nucleotides
8735 and 8736 are separated by 99 nucleotides
8736 and 8737 are separated by 445 nucleotides
mRNA_365: 8733 - K17945 TPM1_2 tropomyosin, fungi type, at 848,017 to 848,980
8733
mRNA_366: 8734 - HMMPfam-Thioredoxin-like-PF13905,SUPERFAMILY--SSF52833, at 849,261 to 850,411
8734
mRNA_367: 8735 - ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 850,981 to 853,734
8735
mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853,834 to 856,786
8736
mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857,232 to 859,087
8737
Group
Condition
mRNA
_365
mRNA
_366
mRNA
_367
mRNA
_368
mRNA
_369
8733
8734
8735
8736
8737
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
-1.9
-0.5
+0.2
-0.4
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
-1.6
-0.1
-0.1
-0.5
growth on ricinoleic acid
YNB Glucose
N.D.
-1.5
+0.1
-0.0
-0.4
auxotrophy
Dropout Complete
N.D.
-1.0
-0.1
-0.4
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
-0.9
-0.0
-0.3
-0.4
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
-1.1
-0.1
+0.2
-0.6
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
-1.0
-0.5
+0.5
-0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
-1.1
-0.4
+0.1
-0.1
auxotrophy
YNB Glucose
N.D.
-0.9
-0.1
-0.3
-0.2
auxotrophy
YNB Glucose 75mM Methionine
N.D.
-1.0
+0.1
-0.3
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
-0.2
+0.2
-0.4
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
-0.3
-0.5
+0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.2
+0.3
-0.1
-0.3
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.0
+0.4
-0.3
-0.2
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
+0.2
+0.1
-0.3
-0.1
growth on oleic acid
YNB Oleic Acid
N.D.
-0.1
+0.2
+0.2
-0.3
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.1
+0.3
-0.2
-0.2
growth on oleic acid
YNB Glucose
N.D.
+0.1
-0.1
+0.1
-0.1
growth on ypd
YPD
N.D.
-0.4
+0.2
-0.2
+0.5
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
+0.3
+0.2
-0.2
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
+0.4
+0.1
+0.1
-0.2
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