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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8734 and 8735 are separated by 569 nucleotides
8735 and 8736 are separated by 99 nucleotides
8736 and 8737 are separated by 445 nucleotides
8737 and 8738 are separated by 303 nucleotides
mRNA_366: 8734 - HMMPfam-Thioredoxin-like-PF13905,SUPERFAMILY--SSF52833, at 849,261 to 850,411
8734
mRNA_367: 8735 - ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 850,981 to 853,734
8735
mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853,834 to 856,786
8736
mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857,232 to 859,087
8737
mRNA_370: 8738 - HMMPfam-RTC4-like domain-PF14474, at 859,391 to 862,171
8738
Group
Condition
mRNA
_366
mRNA
_367
mRNA
_368
mRNA
_369
mRNA
_370
8734
8735
8736
8737
8738
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-1.9
-0.5
+0.2
-0.4
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.6
-0.1
-0.1
-0.5
+0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.9
-0.0
-0.3
-0.4
-0.1
auxotrophy
YNB Glucose 75mM Methionine
-1.0
+0.1
-0.3
-0.2
-0.4
auxotrophy
Dropout Complete
-1.0
-0.1
-0.4
-0.2
+0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
-1.1
-0.1
+0.2
-0.6
+0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
-0.5
+0.5
-0.5
-0.1
growth on ricinoleic acid
YNB Glucose
-1.5
+0.1
-0.0
-0.4
+0.3
auxotrophy
YNB Glucose
-0.9
-0.1
-0.3
-0.2
-0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-1.1
-0.4
+0.1
-0.1
+0.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.3
-0.5
+0.2
-0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
-0.2
+0.2
-0.4
+0.1
ypd buoyancy
40 hrs High Buoyancy
-0.0
+0.4
-0.3
-0.2
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.2
+0.1
-0.3
-0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
-0.2
+0.3
-0.1
-0.3
-0.1
growth on oleic acid
YNB Glucose
+0.1
-0.1
+0.1
-0.1
-0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.2
+0.2
-0.3
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.4
+0.1
+0.1
-0.2
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.3
-0.2
-0.2
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
-0.2
-0.1
+0.1
growth on ypd
YPD
-0.4
+0.2
-0.2
+0.5
+0.1
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