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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8735 and 8736 are separated by 99 nucleotides
8736 and 8737 are separated by 445 nucleotides
8737 and 8738 are separated by 303 nucleotides
8738 and 8739 are separated by 202 nucleotides
mRNA_367: 8735 - ProSiteProfiles-TPR repeat region circular profile.-PS50293,SMART-Tetratricopeptide repeats-SM00028,SUPERFAMILY--SSF48452, at 850,981 to 853,734
8735
mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853,834 to 856,786
8736
mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857,232 to 859,087
8737
mRNA_370: 8738 - HMMPfam-RTC4-like domain-PF14474, at 859,391 to 862,171
8738
mRNA_371: 8739 - HMMPfam-Protein of unknown function (DUF2408)-PF10303, at 862,374 to 864,566
8739
Group
Condition
mRNA
_367
mRNA
_368
mRNA
_369
mRNA
_370
mRNA
_371
8735
8736
8737
8738
8739
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.2
-0.4
+0.1
-0.8
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.5
+0.2
-0.2
-0.2
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.5
+0.5
-0.5
-0.1
-0.3
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.3
-0.1
-0.3
-0.3
ypd buoyancy
40 hrs High Buoyancy
+0.4
-0.3
-0.2
-0.3
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.5
+0.2
-0.4
+0.0
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
+0.1
-0.2
-0.4
-0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.3
-0.4
-0.1
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
-0.2
-0.2
+0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
-0.3
-0.1
-0.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
-0.1
+0.1
-0.2
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.3
-0.2
-0.4
+0.6
auxotrophy
Dropout Complete
-0.1
-0.4
-0.2
+0.1
+0.4
growth on oleic acid
YNB Glucose
-0.1
+0.1
-0.1
-0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.4
+0.1
-0.1
+0.2
+0.1
auxotrophy
YNB Glucose
-0.1
-0.3
-0.2
-0.0
+0.6
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
+0.2
-0.6
+0.1
+1.0
growth on oleic acid
YNB Oleic Acid
+0.2
+0.2
-0.3
-0.1
+0.6
growth on ricinoleic acid
YNB Glucose
+0.1
-0.0
-0.4
+0.3
+0.7
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.1
-0.5
+0.4
+1.1
growth on ypd
YPD
+0.2
-0.2
+0.5
+0.1
+0.4
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