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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8736 and 8737 are separated by 445 nucleotides
8737 and 8738 are separated by 303 nucleotides
8738 and 8739 are separated by 202 nucleotides
8739 and 8740 are separated by 264 nucleotides
mRNA_368: 8736 - KOG2100 Dipeptidyl aminopeptidase, at 853,834 to 856,786
8736
mRNA_369: 8737 - K20309 TRAPPC12 trafficking protein particle complex subunit 12, at 857,232 to 859,087
8737
mRNA_370: 8738 - HMMPfam-RTC4-like domain-PF14474, at 859,391 to 862,171
8738
mRNA_371: 8739 - HMMPfam-Protein of unknown function (DUF2408)-PF10303, at 862,374 to 864,566
8739
mRNA_372: 8740 - BLAST arsenical pump membrane protein [Exophiala dermat..., at 864,831 to 866,823
8740
Group
Condition
mRNA
_368
mRNA
_369
mRNA
_370
mRNA
_371
mRNA
_372
8736
8737
8738
8739
8740
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.2
-0.4
+0.1
-0.8
-0.4
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.2
-0.3
-0.4
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.1
-0.3
-0.3
-0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.5
-0.5
-0.1
-0.3
-0.4
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.2
-0.4
-0.3
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.2
-0.2
-0.2
-0.5
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.4
+0.0
-0.1
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
-0.1
+0.1
-0.2
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
-0.1
-0.3
+0.1
ypd buoyancy
40 hrs Median Buoyancy
-0.2
-0.2
+0.0
-0.4
+0.3
auxotrophy
YNB Glucose 75mM Arginine
-0.3
-0.4
-0.1
+0.4
+0.1
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
+0.2
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
-0.3
-0.2
-0.4
+0.6
+0.1
auxotrophy
Dropout Complete
-0.4
-0.2
+0.1
+0.4
+0.0
growth on oleic acid
YNB Glucose
+0.1
-0.1
-0.3
+0.3
+0.0
growth on oleic acid
YNB Oleic Acid
+0.2
-0.3
-0.1
+0.6
-0.0
auxotrophy
YNB Glucose
-0.3
-0.2
-0.0
+0.6
+0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
-0.6
+0.1
+1.0
-0.0
growth on ricinoleic acid
YNB Glucose
-0.0
-0.4
+0.3
+0.7
+0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.1
-0.5
+0.4
+1.1
+0.3
growth on ypd
YPD
-0.2
+0.5
+0.1
+0.4
+0.6
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