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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8738 and 8739 are separated by 202 nucleotides
8739 and 8740 are separated by 264 nucleotides
8740 and 8741 are separated by 165 nucleotides
8741 and 8742 are separated by 237 nucleotides
mRNA_370: 8738 - HMMPfam-RTC4-like domain-PF14474, at 859,391 to 862,171
8738
mRNA_371: 8739 - HMMPfam-Protein of unknown function (DUF2408)-PF10303, at 862,374 to 864,566
8739
mRNA_372: 8740 - BLAST arsenical pump membrane protein [Exophiala dermat..., at 864,831 to 866,823
8740
mRNA_373: 8741 - KOG2542 Uncharacterized conserved protein (YdiU family), at 866,989 to 869,456
8741
mRNA_374: 8742 - Hypothetical Protein, at 869,694 to 870,348
8742
Group
Condition
mRNA
_370
mRNA
_371
mRNA
_372
mRNA
_373
mRNA
_374
8738
8739
8740
8741
8742
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
-0.3
-0.4
-0.1
-1.0
facs on lipid accumulation
Sorted High BODIPY Gate
-0.3
-0.3
-0.2
+0.1
-0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.8
-0.4
+0.2
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.3
-0.4
-0.1
+0.2
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
-0.5
-0.1
-0.1
+0.7
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
-0.2
-0.2
+0.0
+0.3
growth on oleic acid
YNB Oleic Acid
-0.1
+0.6
-0.0
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
-0.1
-0.4
-0.1
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.2
+0.1
-0.6
-0.3
+0.8
growth on oleic acid
YNB Glucose
-0.3
+0.3
+0.0
+0.1
+0.4
growth on ypd
YPD
+0.1
+0.4
+0.6
-0.1
-0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.0
-0.4
+0.3
+0.0
+0.7
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
-0.3
+0.0
-0.4
+1.8
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+1.0
-0.0
-0.3
+0.1
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.3
+0.1
-0.1
+1.3
growth on ricinoleic acid
YNB Glucose
+0.3
+0.7
+0.1
+0.0
-0.1
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.4
+0.1
-0.2
+1.4
auxotrophy
YNB Glucose 75mM Methionine
-0.4
+0.6
+0.1
-0.1
+1.7
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.4
+1.1
+0.3
+0.2
+0.2
auxotrophy
Dropout Complete
+0.1
+0.4
+0.0
-0.2
+1.9
auxotrophy
YNB Glucose
-0.0
+0.6
+0.2
+0.1
+2.0
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