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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8740 and 8741 are separated by 165 nucleotides
8741 and 8742 are separated by 237 nucleotides
8742 and 8743 are separated by 434 nucleotides
8743 and 8744 are separated by 474 nucleotides
mRNA_372: 8740 - BLAST arsenical pump membrane protein [Exophiala dermat..., at 864,831 to 866,823
8740
mRNA_373: 8741 - KOG2542 Uncharacterized conserved protein (YdiU family), at 866,989 to 869,456
8741
mRNA_374: 8742 - Hypothetical Protein, at 869,694 to 870,348
8742
mRNA_375: 8743 - HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,ProSitePatterns-Cytidine and deoxycytidylate deaminases zinc-binding region signature.-PS00903,SUPERFAMILY--SSF53927, at 870,783 to 871,769
8743
mRNA_376: 8744 - K00381 cysI sulfite reductase (NADPH) hemoprotein beta-component, at 872,244 to 876,604
8744
Group
Condition
mRNA
_372
mRNA
_373
mRNA
_374
mRNA
_375
mRNA
_376
8740
8741
8742
8743
8744
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.7
-0.5
-3.1
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.2
-0.5
+0.2
-2.6
growth on ricinoleic acid
YNB Glucose
+0.1
+0.0
-0.1
+0.5
-3.2
growth on oleic acid
YNB Glucose
+0.0
+0.1
+0.4
-0.2
-3.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.4
-0.1
-1.0
-0.4
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.4
-0.1
+0.7
-0.6
-1.9
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.2
+1.4
-0.1
-3.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
-0.3
+0.1
+0.0
-1.3
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.0
+0.3
+0.2
-1.8
auxotrophy
YNB Glucose
+0.2
+0.1
+2.0
+0.1
-3.6
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
-0.7
+0.2
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
+0.2
+0.2
-0.1
-1.4
growth on oleic acid
YNB Oleic Acid
-0.0
-0.4
-0.1
+0.3
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.1
+0.2
-0.1
-0.6
+0.4
ypd buoyancy
40 hrs Median Buoyancy
+0.3
+0.0
+0.7
-0.2
-0.2
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.6
-0.3
+0.8
-0.1
+1.3
growth on ypd
YPD
+0.6
-0.1
-0.4
+1.0
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.1
+1.3
-0.5
+0.5
ypd buoyancy
40 hrs No Buoyancy Separation
+0.0
-0.4
+1.8
+0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.1
-0.1
+1.7
-0.1
+0.1
auxotrophy
Dropout Complete
+0.0
-0.2
+1.9
+0.1
+0.4
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