Fitness Browser
Home
Find Gene
BLAST
Experiments
Organisms
Help
Gene
Fitness
Nearby
Cofit
Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
Add gene:
Go
Number of genes on each side:
1
2
3
4
5
Go
Top 21 experiments (either direction), sorted by average fitness
Or view
all 21 experiments
or
choose conditions
or try the
comparative fitness browser
500 nt
8742 and 8743 are separated by 434 nucleotides
8743 and 8744 are separated by 474 nucleotides
8744 and 8745 are separated by 326 nucleotides
8745 and 8746 are separated by 926 nucleotides
mRNA_374: 8742 - Hypothetical Protein, at 869,694 to 870,348
8742
mRNA_375: 8743 - HMMPfam-Cytidine and deoxycytidylate deaminase zinc-binding region-PF00383,ProSitePatterns-Cytidine and deoxycytidylate deaminases zinc-binding region signature.-PS00903,SUPERFAMILY--SSF53927, at 870,783 to 871,769
8743
mRNA_376: 8744 - K00381 cysI sulfite reductase (NADPH) hemoprotein beta-component, at 872,244 to 876,604
8744
mRNA_377: 8745 - KOG1515 Arylacetamide deacetylase, at 876,931 to 878,832
8745
mRNA_378: 8746 - K05012 CLCN3_4_5 chloride channel 3/4/5, at 879,759 to 883,039
8746
Group
Condition
mRNA
_374
mRNA
_375
mRNA
_376
mRNA
_377
mRNA
_378
8742
8743
8744
8745
8746
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.7
-0.5
-3.1
-0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.5
+0.2
-2.6
-0.1
N.D.
growth on oleic acid
YNB Glucose
+0.4
-0.2
-3.0
+0.1
N.D.
growth on ricinoleic acid
YNB Glucose
-0.1
+0.5
-3.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-1.0
-0.4
-0.6
-0.0
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+1.4
-0.1
-3.0
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.7
-0.6
-1.9
+0.1
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
+0.3
+0.2
-1.8
+0.0
N.D.
auxotrophy
YNB Glucose
+2.0
+0.1
-3.6
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.1
+0.0
-1.3
+0.0
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
-0.1
-1.4
+0.1
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.7
+0.2
-0.5
+0.1
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.6
+0.4
+0.0
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.3
-0.5
+0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.7
-0.2
-0.2
-0.2
N.D.
growth on ypd
YPD
-0.4
+1.0
+0.3
+0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+1.3
-0.5
+0.5
-0.2
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+1.8
+0.1
+0.1
-0.3
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.8
-0.1
+1.3
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+1.7
-0.1
+0.1
+0.2
N.D.
auxotrophy
Dropout Complete
+1.9
+0.1
+0.4
-0.3
N.D.
remove
mRNA_374
plot
remove
mRNA_375
plot
remove
mRNA_376
remove
mRNA_377
plot
remove
mRNA_378
plot