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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8754 and 8755 are separated by 371 nucleotides
8755 and 8756 are separated by 2098 nucleotides
8756 and 8757 are separated by 2837 nucleotides
8757 and 8758 are separated by 265 nucleotides
mRNA_386: 8754 - Hypothetical Protein, at 898,444 to 900,294
8754
mRNA_387: 8755 - Hypothetical Protein, at 900,666 to 901,434
8755
mRNA_388: 8756 - Hypothetical Protein, at 903,533 to 904,021
8756
mRNA_389: 8757 - HMMPfam-Vacuolar sorting protein 9 (VPS9) domain-PF02204,ProSiteProfiles-VPS9 domain profile.-PS51205,SUPERFAMILY--SSF109993, at 906,859 to 910,715
8757
mRNA_390: 8758 - K00869 E2.7.1.36, MVK, mvaK1 mevalonate kinase, at 910,981 to 912,334
8758
Group
Condition
mRNA
_386
mRNA
_387
mRNA
_388
mRNA
_389
mRNA
_390
8754
8755
8756
8757
8758
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.0
-1.5
-0.5
N.D.
auxotrophy
Dropout Complete
-0.3
+0.5
-0.3
-0.6
N.D.
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.2
+0.1
-0.3
N.D.
auxotrophy
YNB Glucose
-0.3
+0.5
-0.1
-0.5
N.D.
ypd buoyancy
40 hrs Low Buoyancy
-0.1
-0.1
-0.3
-0.0
N.D.
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
-0.3
-0.1
N.D.
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.6
-0.4
-0.4
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.3
-0.4
-0.2
+0.1
N.D.
auxotrophy
YNB Glucose 75mM Methionine
+0.0
+0.3
-0.4
-0.0
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.2
+0.2
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.9
-0.4
-0.0
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.3
+0.1
+0.2
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.8
-0.1
-0.1
+0.0
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.8
-0.6
+0.0
+0.5
N.D.
growth on ypd
YPD
+0.9
+0.1
-0.1
-0.1
N.D.
growth on oleic acid
YNB Oleic Acid
-0.2
+0.9
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.0
-0.5
-0.3
+0.6
N.D.
growth on oleic acid
YNB Glucose
-0.1
+0.9
-0.1
+0.1
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.9
+0.4
-0.3
+0.2
N.D.
growth on ricinoleic acid
YNB Glucose
+1.1
+0.4
-0.2
+0.1
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+1.3
+0.3
-0.1
+0.5
N.D.
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