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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8766 and 8767 are separated by 172 nucleotides
8767 and 8768 are separated by 338 nucleotides
8768 and 8769 are separated by 606 nucleotides
8769 and 8770 are separated by 42 nucleotides
mRNA_398: 8766 - KOG1305 Amino acid transporter protein, at 925,990 to 928,121
8766
mRNA_399: 8767 - K06874 K06874 zinc finger protein, at 928,294 to 930,157
8767
mRNA_400: 8768 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 930,496 to 933,710
8768
mRNA_401: 8769 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 934,317 to 936,010
8769
mRNA_402: 8770 - BLAST N-terminal acetyltransferase catalytic subunit Nat1 [..., at 936,053 to 937,253
8770
Group
Condition
mRNA
_398
mRNA
_399
mRNA
_400
mRNA
_401
mRNA
_402
8766
8767
8768
8769
8770
ypd buoyancy
40 hrs No Buoyancy Separation
-0.4
N.D.
-1.0
-0.7
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.4
N.D.
+0.1
-1.3
-1.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
N.D.
-0.1
-0.0
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
N.D.
-0.1
-0.2
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.2
N.D.
-0.7
+0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.5
N.D.
-1.0
+0.2
+0.2
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
N.D.
-0.1
-0.3
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
N.D.
-0.0
+0.0
+0.1
growth on ypd
YPD
+0.3
N.D.
+0.4
-0.4
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
N.D.
-0.2
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
N.D.
+0.3
-0.1
+0.1
auxotrophy
YNB Glucose 75mM Methionine
-0.2
N.D.
+0.3
+0.6
-0.0
growth on ricinoleic acid
YNB Glucose
+0.4
N.D.
+0.2
+0.1
-0.0
ypd buoyancy
40 hrs Low Buoyancy
+0.1
N.D.
+0.5
+0.1
+0.0
auxotrophy
YNB Glucose
-0.1
N.D.
+0.2
+0.6
+0.1
auxotrophy
Dropout Complete
-0.3
N.D.
+0.8
+0.4
-0.0
growth on oleic acid
YNB Glucose
+0.1
N.D.
+0.8
+0.1
-0.0
auxotrophy
YNB Glucose 75mM Arginine
-0.1
N.D.
+0.4
+0.6
+0.0
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
N.D.
-0.1
+0.5
+0.3
growth on oleic acid
YNB Oleic Acid
+0.2
N.D.
+1.0
-0.0
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
N.D.
-0.2
+0.3
+0.9
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