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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8768 and 8769 are separated by 606 nucleotides
8769 and 8770 are separated by 42 nucleotides
8770 and 8771 are separated by 73 nucleotides
8771 and 8772 are separated by 430 nucleotides
mRNA_400: 8768 - K00728 POMT dolichyl-phosphate-mannose-protein mannosyltransferase, at 930,496 to 933,710
8768
mRNA_401: 8769 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 934,317 to 936,010
8769
mRNA_402: 8770 - BLAST N-terminal acetyltransferase catalytic subunit Nat1 [..., at 936,053 to 937,253
8770
mRNA_403: 8771 - Hypothetical Protein, at 937,327 to 938,664
8771
mRNA_404: 8772 - HMMPfam-PB1 domain-PF00564,HMMPfam-Zinc finger, ZZ type-PF00569,ProSitePatterns-Zinc finger ZZ-type signature.-PS01357,ProSiteProfiles-Zinc finger ZZ-type profile.-PS50135,SMART-Zinc-binding domain, present in Dystrophin, CREB-binding protein.-SM00291,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF57850, at 939,095 to 942,093
8772
Group
Condition
mRNA
_400
mRNA
_401
mRNA
_402
mRNA
_403
mRNA
_404
8768
8769
8770
8771
8772
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-1.3
-1.0
-1.5
-0.1
ypd buoyancy
40 hrs No Buoyancy Separation
-1.0
-0.7
-0.1
-0.0
+0.0
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.1
-0.0
-0.2
-0.2
-0.2
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.7
+0.2
+0.0
-0.2
-0.1
growth on ricinoleic acid
YNB Ricinoleic Acid
-1.0
+0.2
+0.2
-0.0
+0.1
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.1
-0.3
+0.0
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.2
+0.1
+0.1
+0.0
-0.4
growth on ypd
YPD
+0.4
-0.4
-0.1
+0.0
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.2
-0.1
+0.1
+0.2
growth on ricinoleic acid
YNB Glucose
+0.2
+0.1
-0.0
-0.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.0
+0.1
+0.1
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.3
-0.1
+0.1
+0.2
-0.1
growth on oleic acid
YNB Glucose
+0.8
+0.1
-0.0
-0.0
-0.4
ypd buoyancy
40 hrs Low Buoyancy
+0.5
+0.1
+0.0
-0.0
-0.1
auxotrophy
YNB Glucose 75mM Methionine
+0.3
+0.6
-0.0
-0.1
-0.1
growth on oleic acid
YNB Oleic Acid
+1.0
-0.0
-0.0
-0.0
-0.2
auxotrophy
YNB Glucose
+0.2
+0.6
+0.1
+0.1
-0.1
auxotrophy
YNB Glucose 75mM Arginine
+0.4
+0.6
+0.0
+0.1
-0.1
auxotrophy
Dropout Complete
+0.8
+0.4
-0.0
-0.1
-0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
+0.5
+0.3
+0.4
+0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.2
+0.3
+0.9
+1.0
+0.5
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