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Protein
Homologs
Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8771 and 8772 are separated by 430 nucleotides
8772 and 8773 are separated by 433 nucleotides
8773 and 8774 are separated by 299 nucleotides
8774 and 8775 are separated by 98 nucleotides
mRNA_403: 8771 - Hypothetical Protein, at 937,327 to 938,664
8771
mRNA_404: 8772 - HMMPfam-PB1 domain-PF00564,HMMPfam-Zinc finger, ZZ type-PF00569,ProSitePatterns-Zinc finger ZZ-type signature.-PS01357,ProSiteProfiles-Zinc finger ZZ-type profile.-PS50135,SMART-Zinc-binding domain, present in Dystrophin, CREB-binding protein.-SM00291,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF57850, at 939,095 to 942,093
8772
mRNA_405: 8773 - KOG4563 Cell cycle-regulated histone H1-binding protein, at 942,527 to 943,923
8773
mRNA_406: 8774 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 944,223 to 945,484
8774
mRNA_407: 8775 - Hypothetical Protein, at 945,583 to 946,571
8775
Group
Condition
mRNA
_403
mRNA
_404
mRNA
_405
mRNA
_406
mRNA
_407
8771
8772
8773
8774
8775
facs on lipid accumulation
Sorted High BODIPY Gate
-1.5
-0.1
N.D.
-0.9
-0.2
ypd buoyancy
40 hrs Low Buoyancy
-0.0
-0.1
N.D.
-1.8
-0.3
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.0
N.D.
-1.7
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.1
N.D.
-1.1
+0.0
ypd buoyancy
40 hrs Median Buoyancy
+0.1
+0.1
N.D.
-0.3
-1.0
growth on ypd
YPD
+0.0
-0.1
N.D.
-0.6
-0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.2
-0.1
N.D.
-0.5
+0.1
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.1
N.D.
-0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
-0.0
+0.1
N.D.
+0.3
-0.7
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
N.D.
-0.3
+0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.1
+0.2
N.D.
+0.0
-0.5
growth on oleic acid
YNB Glucose
-0.0
-0.4
N.D.
+0.8
-0.4
auxotrophy
YNB Glucose
+0.1
-0.1
N.D.
-0.6
+0.6
auxotrophy
Dropout Complete
-0.1
-0.1
N.D.
+0.2
+0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.3
N.D.
+0.0
+0.7
buoyancy on lipid accumulation
40 hrs High Buoyancy
-0.2
-0.2
N.D.
+0.0
+1.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.4
+0.2
N.D.
-0.2
+0.4
growth on ricinoleic acid
YNB Glucose
-0.1
+0.0
N.D.
+0.5
+0.5
growth on oleic acid
YNB Oleic Acid
-0.0
-0.2
N.D.
+1.9
-0.5
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.0
-0.4
N.D.
+1.0
+0.7
facs on lipid accumulation
Sorted Low BODIPY Gate
+1.0
+0.5
N.D.
-0.4
+0.4
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