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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8774 and 8775 are separated by 98 nucleotides
8775 and 8776 are separated by 1214 nucleotides
8776 and 8777 are separated by 2429 nucleotides
8777 and 8778 are separated by 611 nucleotides
mRNA_406: 8774 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 944,223 to 945,484
8774
mRNA_407: 8775 - Hypothetical Protein, at 945,583 to 946,571
8775
mRNA_408: 8776 - Hypothetical Protein, at 947,786 to 948,268
8776
mRNA_409: 8777 - K00667 FAS2 fatty acid synthase subunit alpha, fungi type, at 950,698 to 960,325
8777
mRNA_410: 8778 - HMMPfam-WD domain, G-beta repeat-PF00400, at 960,937 to 962,253
8778
Group
Condition
mRNA
_406
mRNA
_407
mRNA
_408
mRNA
_409
mRNA
_410
8774
8775
8776
8777
8778
ypd buoyancy
40 hrs Low Buoyancy
-1.8
-0.3
N.D.
N.D.
-0.3
auxotrophy
YNB Glucose 75mM Methionine
-1.1
+0.0
N.D.
N.D.
-1.0
auxotrophy
YNB Glucose 75mM Arginine
-0.3
+0.1
N.D.
N.D.
-1.7
facs on lipid accumulation
Sorted High BODIPY Gate
-0.9
-0.2
N.D.
N.D.
-0.8
ypd buoyancy
40 hrs Median Buoyancy
-0.3
-1.0
N.D.
N.D.
-0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-1.7
-0.3
N.D.
N.D.
+0.5
auxotrophy
YNB Glucose
-0.6
+0.6
N.D.
N.D.
-1.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.5
+0.1
N.D.
N.D.
-0.5
ypd buoyancy
40 hrs High Buoyancy
-0.4
-0.2
N.D.
N.D.
-0.3
growth on ypd
YPD
-0.6
-0.3
N.D.
N.D.
+0.0
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
-0.5
N.D.
N.D.
+0.2
auxotrophy
Dropout Complete
+0.2
+0.0
N.D.
N.D.
-0.5
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.2
+0.4
N.D.
N.D.
-0.5
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.3
-0.7
N.D.
N.D.
+0.2
growth on oleic acid
YNB Glucose
+0.8
-0.4
N.D.
N.D.
-0.5
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.4
+0.4
N.D.
N.D.
+0.5
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.0
+1.1
N.D.
N.D.
-0.6
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.0
+0.7
N.D.
N.D.
-0.1
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+1.0
+0.7
N.D.
N.D.
-0.7
growth on oleic acid
YNB Oleic Acid
+1.9
-0.5
N.D.
N.D.
-0.0
growth on ricinoleic acid
YNB Glucose
+0.5
+0.5
N.D.
N.D.
+0.4
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