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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8783 and 8784 are separated by 270 nucleotides
8784 and 8785 are separated by 124 nucleotides
8785 and 8786 are separated by 1671 nucleotides
8786 and 8787 are separated by 89 nucleotides
mRNA_415: 8783 - K03511 POLK DNA polymerase kappa, at 969,041 to 971,775
8783
mRNA_416: 8784 - Hypothetical Protein, at 972,046 to 973,465
8784
mRNA_417: 8785 - KOG4697 Integral membrane protein involved in transport between the late Golgi and endosome, at 973,590 to 974,560
8785
mRNA_418: 8786 - KOG2308 Phosphatidic acid-preferring phospholipase A1, contains DDHD domain, at 976,232 to 979,073
8786
mRNA_419: 8787 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 979,163 to 981,247
8787
Group
Condition
mRNA
_415
mRNA
_416
mRNA
_417
mRNA
_418
mRNA
_419
8783
8784
8785
8786
8787
auxotrophy
YNB Glucose 75mM Methionine
-0.2
-0.2
-0.6
-0.1
-0.2
auxotrophy
Dropout Complete
-0.2
-0.1
-0.1
-0.0
-0.5
auxotrophy
YNB Glucose
-0.0
-0.1
-0.3
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.1
+0.1
-0.6
+0.1
-0.3
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.1
-0.1
-0.4
-0.2
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.4
-0.1
-0.1
+0.1
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.1
-0.3
-0.4
+0.0
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
+0.0
-0.6
+0.1
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
-0.1
-0.7
-0.0
+0.2
auxotrophy
YNB Glucose 75mM Arginine
-0.0
-0.2
-0.1
+0.1
-0.1
facs on lipid accumulation
Sorted No BODIPY Gate
+0.0
+0.2
-0.1
-0.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.1
+0.3
-0.5
-0.1
-0.1
growth on oleic acid
YNB Glucose
+0.0
+0.1
-0.2
-0.3
+0.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.0
+0.0
-0.4
+0.2
-0.0
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
+0.2
-0.1
-0.0
-0.0
growth on ypd
YPD
+0.1
+0.4
+0.1
-0.1
-0.3
ypd buoyancy
40 hrs Median Buoyancy
+0.1
-0.1
+0.1
-0.0
+0.1
growth on oleic acid
YNB Oleic Acid
-0.2
+0.2
+0.3
-0.1
+0.1
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.1
+0.2
+0.1
+0.3
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.0
+0.3
+0.0
+0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.4
+0.1
+0.1
+0.2
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