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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8786 and 8787 are separated by 89 nucleotides
8787 and 8788 are separated by 266 nucleotides
8788 and 8789 are separated by 248 nucleotides
8789 and 8790 are separated by 415 nucleotides
mRNA_418: 8786 - KOG2308 Phosphatidic acid-preferring phospholipase A1, contains DDHD domain, at 976,232 to 979,073
8786
mRNA_419: 8787 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 979,163 to 981,247
8787
mRNA_420: 8788 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 981,514 to 982,786
8788
mRNA_421: 8789 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 983,035 to 984,157
8789
mRNA_422: 8790 - KOG0911 Glutaredoxin-related protein, at 984,573 to 985,710
8790
Group
Condition
mRNA
_418
mRNA
_419
mRNA
_420
mRNA
_421
mRNA
_422
8786
8787
8788
8789
8790
auxotrophy
Dropout Complete
-0.0
-0.5
+0.0
+0.0
N.D.
ypd buoyancy
40 hrs No Buoyancy Separation
+0.2
-0.0
+0.1
-0.8
N.D.
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
-0.3
-0.1
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs Median Buoyancy
-0.2
-0.1
+0.4
-0.3
N.D.
auxotrophy
YNB Glucose
-0.1
-0.3
-0.2
+0.4
N.D.
facs on lipid accumulation
Sorted High BODIPY Gate
+0.1
-0.0
-0.2
+0.1
N.D.
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.1
-0.3
+0.4
-0.2
N.D.
ypd buoyancy
40 hrs High Buoyancy
+0.0
+0.2
-0.1
-0.3
N.D.
auxotrophy
YNB Glucose 75mM Arginine
+0.1
-0.1
-0.1
+0.1
N.D.
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.0
-0.0
-0.3
+0.5
N.D.
auxotrophy
YNB Glucose 75mM Methionine
-0.1
-0.2
+0.1
+0.2
N.D.
ypd buoyancy
40 hrs Median Buoyancy
-0.0
+0.1
+0.2
-0.1
N.D.
ypd buoyancy
40 hrs Low Buoyancy
+0.1
+0.3
+0.1
-0.2
N.D.
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.1
-0.1
+0.4
-0.1
N.D.
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-0.1
-0.1
+0.5
+0.2
N.D.
growth on oleic acid
YNB Glucose
-0.3
+0.2
+0.3
+0.3
N.D.
growth on ricinoleic acid
YNB Glucose
-0.0
+0.2
+0.1
+0.5
N.D.
growth on ricinoleic acid
YNB Methylricinoleic Acid
+0.0
+0.3
-0.0
+0.5
N.D.
growth on ypd
YPD
-0.1
-0.3
+0.7
+0.7
N.D.
growth on oleic acid
YNB Oleic Acid
-0.1
+0.1
+0.3
+0.6
N.D.
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.1
+0.2
+0.2
+0.6
N.D.
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