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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8788 and 8789 are separated by 248 nucleotides
8789 and 8790 are separated by 415 nucleotides
8790 and 8791 are separated by 199 nucleotides
8791 and 8792 are separated by 557 nucleotides
mRNA_420: 8788 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 981,514 to 982,786
8788
mRNA_421: 8789 - K11209 yghU, yfcG GSH-dependent disulfide-bond oxidoreductase, at 983,035 to 984,157
8789
mRNA_422: 8790 - KOG0911 Glutaredoxin-related protein, at 984,573 to 985,710
8790
mRNA_423: 8791 - KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion, at 985,910 to 986,810
8791
mRNA_424: 8792 - HMMPfam-Diaphanous GTPase-binding Domain-PF06371,SUPERFAMILY--SSF48371, at 987,368 to 990,699
8792
Group
Condition
mRNA
_420
mRNA
_421
mRNA
_422
mRNA
_423
mRNA
_424
8788
8789
8790
8791
8792
auxotrophy
Dropout Complete
+0.0
+0.0
N.D.
-1.2
-0.4
auxotrophy
YNB Glucose 75mM Arginine
-0.1
+0.1
N.D.
-1.3
-0.1
growth on ricinoleic acid
YNB Glucose
+0.1
+0.5
N.D.
-1.4
-0.5
growth on oleic acid
YNB Glucose
+0.3
+0.3
N.D.
-1.6
-0.3
auxotrophy
YNB Glucose
-0.2
+0.4
N.D.
-1.1
-0.3
auxotrophy
YNB Glucose 75mM Methionine
+0.1
+0.2
N.D.
-1.1
-0.3
buoyancy on lipid accumulation
40 hrs Low Buoyancy
+0.5
+0.2
N.D.
-1.6
-0.0
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.0
+0.5
N.D.
-0.8
-0.6
ypd buoyancy
40 hrs No Buoyancy Separation
+0.1
-0.8
N.D.
-0.2
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
+0.4
-0.2
N.D.
-0.7
-0.3
growth on oleic acid
YNB Oleic Acid
+0.3
+0.6
N.D.
-1.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
-0.1
-0.3
N.D.
+0.2
-0.2
ypd buoyancy
40 hrs Median Buoyancy
+0.2
-0.1
N.D.
-0.1
-0.2
facs on lipid accumulation
Sorted No BODIPY Gate
-0.1
+0.1
N.D.
+0.2
-0.2
facs on lipid accumulation
Sorted Low BODIPY Gate
-0.3
+0.5
N.D.
+0.1
-0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.1
-0.2
N.D.
+0.3
-0.1
facs on lipid accumulation
Sorted High BODIPY Gate
-0.2
+0.1
N.D.
+0.6
-0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.4
-0.3
N.D.
+0.2
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.2
+0.6
N.D.
+0.0
-0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+0.4
-0.1
N.D.
+1.5
-0.2
growth on ypd
YPD
+0.7
+0.7
N.D.
+0.7
+0.3
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