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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8791 and 8792 are separated by 557 nucleotides
8792 and 8793 are separated by 445 nucleotides
8793 and 8794 are separated by 294 nucleotides
8794 and 8795 are separated by 1216 nucleotides
mRNA_423: 8791 - KOG4580 Component of vacuolar transporter chaperone (Vtc) involved in vacuole fusion, at 985,910 to 986,810
8791
mRNA_424: 8792 - HMMPfam-Diaphanous GTPase-binding Domain-PF06371,SUPERFAMILY--SSF48371, at 987,368 to 990,699
8792
mRNA_425: 8793 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 991,145 to 992,451
8793
mRNA_426: 8794 - Hypothetical Protein, at 992,746 to 993,344
8794
mRNA_427: 8795 - Hypothetical Protein, at 994,561 to 995,537
8795
Group
Condition
mRNA
_423
mRNA
_424
mRNA
_425
mRNA
_426
mRNA
_427
8791
8792
8793
8794
8795
auxotrophy
Dropout Complete
-1.2
-0.4
+0.1
-0.1
-1.2
ypd buoyancy
40 hrs No Buoyancy Separation
-0.2
+0.0
-0.3
-0.1
-1.0
growth on oleic acid
YNB Glucose
-1.6
-0.3
+0.7
+0.1
-0.4
auxotrophy
YNB Glucose 75mM Methionine
-1.1
-0.3
-0.0
-0.1
+0.3
growth on ricinoleic acid
YNB Methylricinoleic Acid
-0.8
-0.6
+0.2
+0.5
-0.3
auxotrophy
YNB Glucose
-1.1
-0.3
+0.0
-0.2
+0.7
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
-0.7
-0.3
-0.6
-0.2
+1.0
ypd buoyancy
40 hrs High Buoyancy
+0.2
-0.2
+0.0
+0.0
-0.7
auxotrophy
YNB Glucose 75mM Arginine
-1.3
-0.1
-0.2
-0.2
+1.1
facs on lipid accumulation
Sorted High BODIPY Gate
+0.6
-0.4
+0.2
+0.4
-1.3
growth on ricinoleic acid
YNB Glucose
-1.4
-0.5
+0.1
+0.2
+1.2
buoyancy on lipid accumulation
40 hrs Low Buoyancy
-1.6
-0.0
-0.0
-0.0
+1.3
facs on lipid accumulation
Sorted No BODIPY Gate
+0.2
-0.2
-0.3
+0.2
-0.0
buoyancy on lipid accumulation
40 hrs Median Buoyancy
+0.2
-0.2
-0.5
-0.1
+0.8
growth on oleic acid
YNB Oleic Acid
-1.1
-0.2
+1.0
+0.2
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
+1.5
-0.2
-0.5
-0.0
-0.4
facs on lipid accumulation
Sorted Low BODIPY Gate
+0.1
-0.3
+0.1
+0.6
+0.2
ypd buoyancy
40 hrs Median Buoyancy
-0.1
-0.2
+0.6
+0.1
+0.5
growth on ypd
YPD
+0.7
+0.3
-0.6
+0.4
+0.3
ypd buoyancy
40 hrs Low Buoyancy
+0.3
-0.1
+0.5
+0.3
+1.0
growth on ricinoleic acid
YNB Ricinoleic Acid
+0.0
-0.3
+0.7
+0.2
+1.6
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