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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8801 and 8802 are separated by 508 nucleotides
8802 and 8803 are separated by 329 nucleotides
8803 and 8804 are separated by 432 nucleotides
8804 and 8805 are separated by 851 nucleotides
mRNA_433: 8801 - K03247 EIF3H translation initiation factor 3 subunit H, at 1,004,332 to 1,006,168
8801
mRNA_434: 8802 - K08738 CYC cytochrome c, at 1,006,677 to 1,007,742
8802
mRNA_435: 8803 - K14845 RAI1, DOM3Z RAT1-interacting protein, at 1,008,072 to 1,010,135
8803
mRNA_436: 8804 - HMMPfam-CLASP N terminal-PF12348, at 1,010,568 to 1,012,798
8804
mRNA_437: 8805 - Hypothetical Protein, at 1,013,650 to 1,014,960
8805
Group
Condition
mRNA
_433
mRNA
_434
mRNA
_435
mRNA
_436
mRNA
_437
8801
8802
8803
8804
8805
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
N.D.
-0.8
-0.8
-0.7
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
N.D.
-0.4
-0.4
-1.0
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
N.D.
-0.5
+0.7
-1.8
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
N.D.
-0.2
-0.1
-0.6
growth on ypd
YPD
N.D.
N.D.
-0.8
-0.1
+0.2
ypd buoyancy
40 hrs Low Buoyancy
N.D.
N.D.
-0.3
-0.1
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
N.D.
-0.1
-0.2
-0.1
ypd buoyancy
40 hrs Median Buoyancy
N.D.
N.D.
+0.0
-0.3
-0.0
auxotrophy
YNB Glucose 75mM Methionine
N.D.
N.D.
+0.3
-0.2
+0.0
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
N.D.
+0.4
+0.4
-0.4
growth on oleic acid
YNB Glucose
N.D.
N.D.
+0.2
+0.1
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
N.D.
+0.5
-0.2
+0.2
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
N.D.
+0.6
+0.1
-0.1
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
N.D.
+0.3
+0.4
-0.1
auxotrophy
YNB Glucose 75mM Arginine
N.D.
N.D.
+0.5
-0.2
+0.4
auxotrophy
Dropout Complete
N.D.
N.D.
+0.1
-0.0
+0.6
growth on oleic acid
YNB Oleic Acid
N.D.
N.D.
+0.3
+0.5
-0.0
growth on ricinoleic acid
YNB Glucose
N.D.
N.D.
+0.5
+0.4
-0.1
auxotrophy
YNB Glucose
N.D.
N.D.
+0.4
+0.1
+0.5
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
N.D.
+0.6
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
N.D.
+0.4
+0.4
+0.7
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