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Protein
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Fitness for 5 genes in
Rhodosporidium toruloides IFO0880
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Top 21 experiments (either direction), sorted by average fitness
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500 nt
8802 and 8803 are separated by 329 nucleotides
8803 and 8804 are separated by 432 nucleotides
8804 and 8805 are separated by 851 nucleotides
8805 and 8806 are separated by 206 nucleotides
mRNA_434: 8802 - K08738 CYC cytochrome c, at 1,006,677 to 1,007,742
8802
mRNA_435: 8803 - K14845 RAI1, DOM3Z RAT1-interacting protein, at 1,008,072 to 1,010,135
8803
mRNA_436: 8804 - HMMPfam-CLASP N terminal-PF12348, at 1,010,568 to 1,012,798
8804
mRNA_437: 8805 - Hypothetical Protein, at 1,013,650 to 1,014,960
8805
mRNA_438: 8806 - Hypothetical Protein, at 1,015,167 to 1,016,657
8806
Group
Condition
mRNA
_434
mRNA
_435
mRNA
_436
mRNA
_437
mRNA
_438
8802
8803
8804
8805
8806
ypd buoyancy
40 hrs No Buoyancy Separation
N.D.
-0.8
-0.8
-0.7
+0.1
facs on lipid accumulation
Sorted Low BODIPY Gate
N.D.
-0.5
+0.7
-1.8
-0.5
facs on lipid accumulation
Sorted High BODIPY Gate
N.D.
-0.4
-0.4
-1.0
-0.3
ypd buoyancy
40 hrs Low Buoyancy
N.D.
-0.3
-0.1
-0.2
-0.4
facs on lipid accumulation
Sorted No BODIPY Gate
N.D.
-0.2
-0.1
-0.6
-0.2
ypd buoyancy
40 hrs High Buoyancy
N.D.
-0.1
-0.2
-0.1
-0.5
ypd buoyancy
40 hrs Median Buoyancy
N.D.
+0.0
-0.3
-0.0
-0.3
growth on ypd
YPD
N.D.
-0.8
-0.1
+0.2
+0.4
growth on oleic acid
YNB Glucose
N.D.
+0.2
+0.1
+0.1
-0.6
auxotrophy
YNB Glucose 75mM Methionine
N.D.
+0.3
-0.2
+0.0
-0.1
auxotrophy
Dropout Complete
N.D.
+0.1
-0.0
+0.6
-0.4
growth on oleic acid
YNB Oleic Acid
N.D.
+0.3
+0.5
-0.0
-0.5
growth on ricinoleic acid
YNB Methylricinoleic Acid
N.D.
+0.3
+0.4
-0.1
-0.2
auxotrophy
YNB Glucose 75mM Arginine
N.D.
+0.5
-0.2
+0.4
-0.2
growth on ricinoleic acid
YNB Ricinoleic Acid
N.D.
+0.4
+0.4
-0.4
+0.1
buoyancy on lipid accumulation
40 hrs Low Buoyancy
N.D.
+0.5
-0.2
+0.2
+0.2
auxotrophy
YNB Glucose
N.D.
+0.4
+0.1
+0.5
-0.2
growth on ricinoleic acid
YNB Glucose
N.D.
+0.5
+0.4
-0.1
+0.0
buoyancy on lipid accumulation
40 hrs No Buoyancy Separation
N.D.
+0.6
+0.1
-0.1
+0.4
buoyancy on lipid accumulation
40 hrs Median Buoyancy
N.D.
+0.6
+0.3
+0.3
+0.3
buoyancy on lipid accumulation
40 hrs High Buoyancy
N.D.
+0.4
+0.4
+0.7
+0.1
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